RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 GLIS2Q9BZE0 524 aaPredicted RBP5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 IQCGQ9H095 443 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 KLC2Q9H0B6 622 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 NRDE2Q9H7Z3 1164 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 IFT122Q9HBG6 1241 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 HACD3Q9P035 362 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 PADI4Q9UM07 663 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 USP18Q9UMW8 372 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 SF3B1O75533 1304 aaKnown RBP eCLIP5.95□□□□□ -1.463e-6■■■■□ 22.9
CCDC88A-203ENST00000412148 SLC15A5A6NIM6 579 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 TRIM49D1C9J1S8 452 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 E5RJQ4 531 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 H0Y3Z8 333 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 PITPNM1O00562 1244 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 DENRO43583 198 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 GLRA3O75311 464 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 GSRP00390 522 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 IFNB1P01574 187 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 PDHA1P08559 390 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 MMP10P09238 476 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 SETSIPP0DME0 302 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 OSBPP22059 807 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 CDC25CP30307 473 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 SSR1P43307 286 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 HARS2P49590 506 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 PLCB3Q01970 1234 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 GAD2Q05329 585 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 INCA1Q0VD86 236 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 OVGP1Q12889 678 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 CDC16Q13042 620 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 LSAMPQ13449 338 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 CUL3Q13618 768 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 MXD4Q14582 209 aaPredicted RBP5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 AMHR2Q16671 573 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 KYAT1Q16773 422 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 BBS9Q3SYG4 887 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 LIN52Q52LA3 116 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 C2CD6Q53TS8 623 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 IER5Q5VY09 327 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 BORAQ6PGQ7 559 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 DHDDSQ86SQ9 333 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 LCA5Q86VQ0 697 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 WDR75Q8IWA0 830 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 SLC7A14Q8TBB6 771 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 PIWIL2Q8TC59 973 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 SPATA18Q8TC71 538 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 SIGLEC10Q96LC7 697 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 ACO2Q99798 780 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 TRIM4Q9C037 500 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 RAVER2Q9HCJ3 691 aaKnown RBP5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 RNF146Q9NTX7 359 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 KLHL11Q9NVR0 708 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 PKD2L1Q9P0L9 805 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 FBXO40Q9UH90 709 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 DCDC2Q9UHG0 476 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 CHMP2BQ9UQN3 213 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 PCDHA11Q9Y5I1 949 aa5.95□□□□□ -1.46
CCDC88A-203ENST00000412148 FAM237BA0A1B0GVD1 139 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 C2CD4BA6NLJ0 364 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 H0YJX3 145 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 GPR25O00155 361 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 H2AFYO75367 372 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 CST3P01034 146 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 VDRP11473 427 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 MYCLP12524 364 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 UQCRBP14927 111 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 ZFXP17010 805 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF16P17020 682 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 AMPD1P23109 780 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 MIPP30301 263 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 PEX19P40855 299 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 DEUP1Q05D60 604 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 NIPAL4Q0D2K0 466 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 SEMA5AQ13591 1074 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 EFHC1Q5JVL4 640 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 RNF220Q5VTB9 566 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 IRAK1BP1Q5VVH5 260 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 MBLAC2Q68D91 279 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 DARS2Q6PI48 645 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 POTEAQ6S8J7 498 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 CDHR3Q6ZTQ4 885 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF467Q7Z7K2 595 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 ZC3H18Q86VM9 953 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 NT5DC4Q86YG4 428 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 ZDHHC17Q8IUH5 632 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 EGFL6Q8IUX8 553 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 CDKL3Q8IVW4 592 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 ST13P4Q8IZP2 240 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 MARVELD2Q8N4S9 558 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 KCTD6Q8NC69 237 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 FAM161BQ96MY7 647 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 TEPSINQ96N21 525 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 GBP5Q96PP8 586 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 EBNA1BP2Q99848 306 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 TARS2Q9BW92 718 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF302Q9NR11 478 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 C6orf203Q9P0P8 240 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF112Q9UJU3 913 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 ADAM28Q9UKQ2 775 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 PRPF19Q9UMS4 504 aaKnown RBP5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms