RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 HHIPL1Q96JK4 782 aa20.91■□□□□ 0.94
USP39-204ENST00000409766 CSPG4P5Q96PW8 444 aa20.91■□□□□ 0.94
USP39-204ENST00000409766 SLC24A2Q9UI40 661 aa20.91■□□□□ 0.94
USP39-204ENST00000409766 TMEM88BA6NKF7 163 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 CHADO15335 359 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 ZBED1O96006 694 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 ZFXP17010 805 aaPredicted RBP20.9■□□□□ 0.94
USP39-204ENST00000409766 SSTR1P30872 391 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 THPOP40225 353 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 LRRC14Q15048 493 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 EFHC2Q5JST6 749 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 OTUD1Q5VV17 481 aaPredicted RBP20.9■□□□□ 0.94
USP39-204ENST00000409766 BNIPLQ7Z465 357 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 YTHDF3Q7Z739 585 aaKnown RBP20.9■□□□□ 0.94
USP39-204ENST00000409766 TRABD2AQ86V40 505 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 KLHDC9Q8NEP7 349 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 MED10Q9BTT4 135 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 LRRC4Q9HBW1 653 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 FETUBQ9UGM5 382 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 PADI3Q9ULW8 664 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.9■□□□□ 0.94
USP39-204ENST00000409766 CASP8AP2Q9UKL3 1982 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 TSC2P49815 1807 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 ZNF623O75123 536 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 FAM200BP0CF97 657 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 RPL9P32969 192 aaKnown RBP20.9■□□□□ 0.94
USP39-204ENST00000409766 PHBP35232 272 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 SULT1E1P49888 294 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 MAP3K7CLP57077 242 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 CAP1Q01518 475 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 GBE1Q04446 702 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 SLC10A2Q12908 348 aaPredicted RBP20.9■□□□□ 0.94
USP39-204ENST00000409766 CBLBQ13191 982 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 BBS9Q3SYG4 887 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 DCAF6Q58WW2 860 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 CCSAPQ6IQ19 270 aaPredicted RBP20.9■□□□□ 0.94
USP39-204ENST00000409766 C3orf62Q6ZUJ4 267 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 LRRC34Q8IZ02 419 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 MGARPQ8TDB4 240 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 SYT15Q9BQS2 421 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 KRT82Q9NSB4 513 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 FZD10Q9ULW2 581 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 TIMM13Q9Y5L4 95 aaPredicted RBP20.9■□□□□ 0.94
USP39-204ENST00000409766 USP3Q9Y6I4 520 aa20.9■□□□□ 0.94
USP39-204ENST00000409766 MGEA5O60502 916 aa20.89■□□□□ 0.93
USP39-204ENST00000409766 CCND3P30281 292 aaPredicted RBP20.89■□□□□ 0.93
USP39-204ENST00000409766 CD52P31358 61 aa20.89■□□□□ 0.93
USP39-204ENST00000409766 NOS2P35228 1153 aa20.89■□□□□ 0.93
USP39-204ENST00000409766 NR2C2P49116 596 aa20.89■□□□□ 0.93
USP39-204ENST00000409766 XRCC4Q13426 336 aa20.89■□□□□ 0.93
USP39-204ENST00000409766 MTM1Q13496 603 aa20.89■□□□□ 0.93
USP39-204ENST00000409766 UPP1Q16831 310 aa20.89■□□□□ 0.93
USP39-204ENST00000409766 FAM182AQ5T1J6 154 aa20.89■□□□□ 0.93
USP39-204ENST00000409766 FAM131BQ86XD5 332 aa20.89■□□□□ 0.93
USP39-204ENST00000409766 ANKRD42Q8N9B4 389 aa20.89■□□□□ 0.93
USP39-204ENST00000409766 NPY6RQ99463 290 aa20.89■□□□□ 0.93
USP39-204ENST00000409766 PAAF1Q9BRP4 392 aa20.89■□□□□ 0.93
USP39-204ENST00000409766 RAB6BQ9NRW1 208 aa20.89■□□□□ 0.93
USP39-204ENST00000409766 MYBPHLA2RUH7 354 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 CASTOR2A6NHX0 329 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 TRIM66O15016 1216 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 TSHRP16473 764 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 TKTL1P51854 596 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 GEMIN4P57678 1058 aaKnown RBP20.88■□□□□ 0.93
USP39-204ENST00000409766 PITX1P78337 314 aaPredicted RBP20.88■□□□□ 0.93
USP39-204ENST00000409766 DSTYKQ6XUX3 929 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 PSTKQ8IV42 348 aaKnown RBP20.88■□□□□ 0.93
USP39-204ENST00000409766 CDKL3Q8IVW4 592 aaPredicted RBP20.88■□□□□ 0.93
USP39-204ENST00000409766 CACNA2D3Q8IZS8 1091 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 SIX6OS1Q8N1H7 587 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 PYROXD2Q8N2H3 581 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 DYDC1Q8WWB3 177 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 PCED1BQ96HM7 432 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 SLC2A13Q96QE2 648 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 ACSS3Q9H6R3 686 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 HTTP42858 3142 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 TOMM70O94826 608 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 GOT1P17174 413 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 IFT88Q13099 833 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 PKN2Q16513 984 aaKnown RBP20.88■□□□□ 0.93
USP39-204ENST00000409766 SLC45A4Q5BKX6 768 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 PPP1R21Q6ZMI0 780 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 FAM35AQ86V20 835 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 PALM2Q8IXS6 379 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 LRRN4Q8WUT4 740 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 SMOQ99835 787 aa20.88■□□□□ 0.93
USP39-204ENST00000409766 RCOR3Q9P2K3 495 aaPredicted RBP20.88■□□□□ 0.93
USP39-204ENST00000409766 PSMC3IPQ9P2W1 217 aaPredicted RBP20.88■□□□□ 0.93
USP39-204ENST00000409766 ALDH1A1P00352 501 aa20.87■□□□□ 0.93
USP39-204ENST00000409766 MYCNP04198 464 aaPredicted RBP20.87■□□□□ 0.93
USP39-204ENST00000409766 GHRP10912 638 aa20.87■□□□□ 0.93
USP39-204ENST00000409766 CST5P28325 142 aaPredicted RBP20.87■□□□□ 0.93
USP39-204ENST00000409766 MAGEA6P43360 314 aa20.87■□□□□ 0.93
USP39-204ENST00000409766 RAB27AP51159 221 aa20.87■□□□□ 0.93
USP39-204ENST00000409766 DSC3Q14574 896 aa20.87■□□□□ 0.93
USP39-204ENST00000409766 TIGD5Q53EQ6 642 aa20.87■□□□□ 0.93
USP39-204ENST00000409766 SYPL2Q5VXT5 272 aa20.87■□□□□ 0.93
USP39-204ENST00000409766 NCBP2-AS2Q69YL0 99 aa20.87■□□□□ 0.93
USP39-204ENST00000409766 PIGWQ7Z7B1 504 aa20.87■□□□□ 0.93
USP39-204ENST00000409766 IGDCC3Q8IVU1 814 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms