RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 GPR153Q6NV75 609 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 TADA2BQ86TJ2 420 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 TMC8Q8IU68 726 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 MYLIPQ8WY64 445 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 CDK5RAP1Q96SZ6 601 aaKnown RBP18.87■□□□□ 0.61
SDC1-203ENST00000403076 LRRC3Q9BY71 257 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 GOLPH3Q9H4A6 298 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 FAM204AQ9H8W3 233 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 OLA1Q9NTK5 396 aaKnown RBP18.87■□□□□ 0.61
SDC1-203ENST00000403076 RRN3Q9NYV6 651 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 COX16Q9P0S2 106 aa18.87■□□□□ 0.61
SDC1-203ENST00000403076 M0QYT0 321 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 SPOPO43791 374 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 TLR5O60602 858 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 HOXB8P17481 243 aaPredicted RBP18.86■□□□□ 0.61
SDC1-203ENST00000403076 GBP1P32455 592 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 NTHL1P78549 312 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 EFEMP1Q12805 493 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 GAREM2Q75VX8 874 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 ADAM32Q8TC27 787 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 DQX1Q8TE96 717 aaKnown RBP18.86■□□□□ 0.61
SDC1-203ENST00000403076 FAM172AQ8WUF8 416 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 TBCBQ99426 244 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 NPY6RQ99463 290 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 CCSER2Q9H7U1 834 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 TRPC7Q9HCX4 862 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 HYOU1Q9Y4L1 999 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 ALG6Q9Y672 507 aa18.86■□□□□ 0.61
SDC1-203ENST00000403076 A0A1W2PRU2 124 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 TADA3O75528 432 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 TRUB2O95900 331 aaKnown RBP18.85■□□□□ 0.61
SDC1-203ENST00000403076 TNNT1P13805 278 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 ATP5C1P36542 298 aaKnown RBP18.85■□□□□ 0.61
SDC1-203ENST00000403076 SLC1A1P43005 524 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 PITX1P78337 314 aaPredicted RBP18.85■□□□□ 0.61
SDC1-203ENST00000403076 CYP4F8P98187 520 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 DEUP1Q05D60 604 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 ZNF252P-AS1Q0IIN9 211 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 NME3Q13232 169 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 ACAP1Q15027 740 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 ARHGAP15Q53QZ3 475 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 SH3PXD2AQ5TCZ1 1133 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 SNX30Q5VWJ9 437 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 CC2D1AQ6P1N0 951 aaPredicted RBP18.85■□□□□ 0.61
SDC1-203ENST00000403076 PEX26Q7Z412 305 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 TMEM150AQ86TG1 271 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 SLC35F6Q8N357 371 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 DEFB123Q8N688 67 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 C16orf45Q96MC5 204 aaPredicted RBP18.85■□□□□ 0.61
SDC1-203ENST00000403076 CDX2Q99626 313 aaPredicted RBP18.85■□□□□ 0.61
SDC1-203ENST00000403076 DDIT4Q9NX09 232 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 RASAL2Q9UJF2 1139 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 AMFRQ9UKV5 643 aa18.85■□□□□ 0.61
SDC1-203ENST00000403076 ZNF197O14709 1029 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 TBX18O95935 607 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 FTCDO95954 541 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 GJA1P17302 382 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 TFE3P19532 575 aaPredicted RBP18.84■□□□□ 0.61
SDC1-203ENST00000403076 COMTP21964 271 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 MAN1A1P33908 653 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 EPHA5P54756 1037 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 SCYL2Q6P3W7 929 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 SND1Q7KZF4 910 aaKnown RBP eCLIP18.84■□□□□ 0.612e-8■■■□□ 15
SDC1-203ENST00000403076 NIPA2Q8N8Q9 360 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 LRRC57Q8N9N7 239 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 RNF34Q969K3 372 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 NCAPGQ9BPX3 1015 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.84■□□□□ 0.612e-7■■■■□ 20.1
SDC1-203ENST00000403076 SFMBT1Q9UHJ3 866 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 DNMT3LQ9UJW3 386 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 C2orf78A6NCI8 922 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 MDM4O15151 490 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 F9P00740 461 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 DAB2IPQ5VWQ8 1189 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 TXNDC8Q6A555 127 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 CES5AQ6NT32 575 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 MSANTD2Q6P1R3 559 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 SYCE2Q6PIF2 218 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 STRADAQ7RTN6 431 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 GPR149Q86SP6 731 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 TAC4Q86UU9 113 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 CPNE8Q86YQ8 564 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 MIB1Q86YT6 1006 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 ZNF276Q8N554 614 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 SHKBP1Q8TBC3 707 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 NT5C3BQ969T7 300 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 PABPC5Q96DU9 382 aaKnown RBP18.84■□□□□ 0.61
SDC1-203ENST00000403076 TCEAL4Q96EI5 215 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 SERPINB11Q96P15 392 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 SMOC2Q9H3U7 446 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 MARCH2Q9P0N8 246 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 CLEC1BQ9P126 229 aa18.84■□□□□ 0.61
SDC1-203ENST00000403076 MRPS23Q9Y3D9 190 aaKnown RBP18.84■□□□□ 0.61
SDC1-203ENST00000403076 COCHO43405 550 aa18.83■□□□□ 0.6
SDC1-203ENST00000403076 FOSL2P15408 326 aa18.83■□□□□ 0.6
SDC1-203ENST00000403076 GJC1P36383 396 aa18.83■□□□□ 0.6
SDC1-203ENST00000403076 CCR2P41597 374 aa18.83■□□□□ 0.6
SDC1-203ENST00000403076 TUBP50607 506 aa18.83■□□□□ 0.6
SDC1-203ENST00000403076 CCDC85BQ15834 202 aaPredicted RBP18.83■□□□□ 0.6
SDC1-203ENST00000403076 HADHQ16836 314 aaKnown RBP18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms