RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 KLHL4Q9C0H6 718 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 EHMT1Q9H9B1 1298 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 DNAJC16Q9Y2G8 782 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 COQ4Q9Y3A0 265 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 MRPL11Q9Y3B7 192 aaKnown RBP10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 HEMK1Q9Y5R4 338 aaPredicted RBP10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 USP3Q9Y6I4 520 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 C10orf71Q711Q0 1435 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 CFLARO15519 480 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 MAGEC1O60732 1142 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 DNAJC6O75061 913 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 BBOX1O75936 387 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 IL1R2P27930 398 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 STX3Q13277 289 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 DGKZQ13574 1117 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 PLEKHA7Q6IQ23 1121 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 NAT8LQ8N9F0 302 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 OR5B17Q8NGF7 314 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 COMMD3-BMI1R4GMX3 469 aa10.25□□□□□ -0.77
PTCHD4-202ENST00000398738 A0A088AWK7 358 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 A0A0B4J269 797 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 TMEM191CA6NGB0 347 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 ITM2AO43736 263 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 PEX1O43933 1283 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 DGKIO75912 1065 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 HNRNPCP07910 306 aaKnown RBP eCLIP10.24□□□□□ -0.771e-6■■□□□ 11.8
PTCHD4-202ENST00000398738 TMEM191BP0C7N4 346 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 CRABP2P29373 138 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 FOLH1Q04609 750 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 MSLNQ13421 630 aaPredicted RBP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 DNAL1Q4LDG9 190 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 SH3PXD2AQ5TCZ1 1133 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 GPAT2Q6NUI2 795 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 ICA1LQ8NDH6 482 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 JOSD2Q8TAC2 188 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 SLC10A4Q96EP9 437 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 GMCL1Q96IK5 515 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 ZNF668Q96K58 619 aaPredicted RBP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 COA1Q9GZY4 146 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 SAP130Q9H0E3 1048 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 SOX13Q9UN79 622 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 DNMT3AQ9Y6K1 912 aaPredicted RBP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 ASTN2O75129 1339 aaPredicted RBP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 CNTNAP4Q9C0A0 1308 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 CAPN14A8MX76 684 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 BUD23O43709 281 aaKnown RBP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 ITGA2BP08514 1039 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 UQCRBP14927 111 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 TPP2P29144 1249 aaPredicted RBP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 PMLP29590 882 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 CYTH1Q15438 398 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 ATG16L1Q676U5 607 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 CASC4Q6P4E1 433 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 FBXL19Q6PCT2 694 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 PDSS2Q86YH6 399 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 UNC5BQ8IZJ1 945 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 TMEM143Q96AN5 459 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 ATXN7L3BQ96GX2 97 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 PRPF18Q99633 342 aaKnown RBP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 XPNPEP1Q9NQW7 623 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 KCNK4Q9NYG8 393 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 NXF1Q9UBU9 619 aaKnown RBP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 ZC3H7BQ9UGR2 993 aaKnown RBP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 INPP5FQ9Y2H2 1132 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 TDRKHQ9Y2W6 561 aaKnown RBP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 ZNF711Q9Y462 761 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 ATAD5Q96QE3 1844 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 MAST2Q6P0Q8 1798 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 ZNF536O15090 1300 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 C15orf38-AP3S2A0A0A6YYH1 394 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 LRRIQ4A6NIV6 560 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 F8W8V4 182 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 GRAP2O75791 330 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 STAM2O75886 525 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 KRT37O76014 449 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 CLPTM1O96005 669 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 ITGAVP06756 1048 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 TCN1P20061 433 aaPredicted RBP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 OSTNP61366 133 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 DPYSL3Q14195 570 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 MTERF2Q49AM1 385 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 TRMT10BQ6PF06 316 aaKnown RBP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 ARPINQ7Z6K5 226 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 TMEM130Q8N3G9 435 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 KLHL23Q8NBE8 558 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 FAM172AQ8WUF8 416 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 SLC44A1Q8WWI5 657 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 AZIN2Q96A70 460 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 LIN28AQ9H9Z2 209 aaKnown RBP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 GABBR1Q9UBS5 961 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 MAGED2Q9UNF1 606 aaPredicted RBP10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 PLA2G4CQ9UP65 541 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 NR2E3Q9Y5X4 410 aa10.24□□□□□ -0.77
PTCHD4-202ENST00000398738 DOT1LQ8TEK3 1739 aa10.23□□□□□ -0.77
PTCHD4-202ENST00000398738 ZNF831Q5JPB2 1677 aa10.23□□□□□ -0.77
PTCHD4-202ENST00000398738 WDR64B1ANS9 1081 aa10.23□□□□□ -0.77
PTCHD4-202ENST00000398738 MCF2LO15068 1137 aa10.23□□□□□ -0.77
PTCHD4-202ENST00000398738 ATP6V1G1O75348 118 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms