RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 BST2Q10589 180 aaKnown RBP22.79■■□□□ 1.24
CCDC28B-201ENST00000373602 PM20D1Q6GTS8 502 aa22.79■■□□□ 1.24
CCDC28B-201ENST00000373602 RASSF3Q86WH2 238 aa22.79■■□□□ 1.24
CCDC28B-201ENST00000373602 MIB1Q86YT6 1006 aa22.79■■□□□ 1.24
CCDC28B-201ENST00000373602 TXNDC5Q8NBS9 432 aaKnown RBP22.79■■□□□ 1.24
CCDC28B-201ENST00000373602 WDR35Q9P2L0 1181 aa22.79■■□□□ 1.24
CCDC28B-201ENST00000373602 WDR87Q6ZQQ6 2873 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 TBC1D3BA6NDS4 549 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 KLF8O95600 359 aaPredicted RBP22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 ZBED1O96006 694 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 PAEPP09466 180 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 HNRNPLP14866 589 aaKnown RBP eCLIP22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 SDHBP21912 280 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 YWHAGP61981 247 aaKnown RBP eCLIP22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 COG7P83436 770 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 TMEM270Q6UE05 265 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 TMEM92Q6UXU6 159 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 TERB1Q8NA31 727 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 KCNV2Q8TDN2 545 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 CNOT6LQ96LI5 555 aaKnown RBP22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 BBS2Q9BXC9 721 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 SRRTQ9BXP5 876 aaKnown RBP22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 ULBP1Q9BZM6 244 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 CHMP5Q9NZZ3 219 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 RASAL2Q9UJF2 1139 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 PCDHB4Q9Y5E5 795 aa22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 DYNC1LI1Q9Y6G9 523 aaKnown RBP22.78■■□□□ 1.24
CCDC28B-201ENST00000373602 SPAG17Q6Q759 2223 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 NEDD8-MDP1E9PL57 170 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 SGK1O00141 431 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 CACNG3O60359 315 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 EPN2O95208 641 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 TYRP14679 529 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 EFEMP1Q12805 493 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 KCNH2Q12809 1159 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 PLK5Q496M5 336 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 PKDCCQ504Y2 493 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 EOGTQ5NDL2 527 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 GRAMD4Q6IC98 578 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 PRR23CQ6ZRP0 262 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 TPGS1Q6ZTW0 290 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 NUDT18Q6ZVK8 323 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 BHLHA9Q7RTU4 235 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 DGLUCYQ7Z3D6 616 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 PPM1KQ8N3J5 372 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 EHBP1Q8NDI1 1231 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 UBA3Q8TBC4 463 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 KCTD13Q8WZ19 329 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 TFAP2BQ92481 460 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 KAT5Q92993 513 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 XPO6Q96QU8 1125 aaKnown RBP22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 LRRC4Q9HBW1 653 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 KIAA1468Q9P260 1216 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 ZNF510Q9Y2H8 683 aa22.77■■□□□ 1.24
CCDC28B-201ENST00000373602 TRIM24O15164 1050 aa22.76■■□□□ 1.23
CCDC28B-201ENST00000373602 ADAM23O75077 832 aa22.76■■□□□ 1.23
CCDC28B-201ENST00000373602 KLKB1P03952 638 aa22.76■■□□□ 1.23
CCDC28B-201ENST00000373602 SETSIPP0DME0 302 aa22.76■■□□□ 1.23
CCDC28B-201ENST00000373602 GCNT1Q02742 428 aa22.76■■□□□ 1.23
CCDC28B-201ENST00000373602 ANO7Q6IWH7 933 aa22.76■■□□□ 1.23
CCDC28B-201ENST00000373602 LCLAT1Q6UWP7 414 aa22.76■■□□□ 1.23
CCDC28B-201ENST00000373602 DCLK3Q9C098 648 aa22.76■■□□□ 1.23
CCDC28B-201ENST00000373602 DUSP15Q9H1R2 295 aaPredicted RBP22.76■■□□□ 1.23
CCDC28B-201ENST00000373602 ARRDC1-AS1Q9H2J1 176 aa22.76■■□□□ 1.23
CCDC28B-201ENST00000373602 DNAJC17Q9NVM6 304 aaKnown RBP22.76■■□□□ 1.23
CCDC28B-201ENST00000373602 MARCH2Q9P0N8 246 aa22.76■■□□□ 1.23
CCDC28B-201ENST00000373602 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.76■■□□□ 1.23
CCDC28B-201ENST00000373602 DCHS1Q96JQ0 3298 aa22.76■■□□□ 1.23
CCDC28B-201ENST00000373602 FRYLO94915 3013 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 RNF225M0QZC1 329 aaPredicted RBP22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 DCLK1O15075 740 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 FOXD2O60548 495 aaPredicted RBP22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 FGFR1OPO95684 399 aaKnown RBP22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 AFPP02771 609 aaKnown RBP22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 ADIGQ0VDE8 80 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 CAMK4Q16566 473 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 USP39Q53GS9 565 aaKnown RBP22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 C10orf76Q5T2E6 689 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 RSRC2Q7L4I2 434 aaKnown RBP22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 RRAGAQ7L523 313 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 ARHGEF19Q8IW93 802 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 MDGA1Q8NFP4 955 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 NDRG1Q92597 394 aaKnown RBP22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 ZSWIM1Q9BR11 485 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 TPSD1Q9BZJ3 242 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 ZDHHC4Q9NPG8 344 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 CDV3Q9UKY7 258 aaKnown RBP22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 HCN2Q9UL51 889 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 STRIP2Q9ULQ0 834 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 STARD13Q9Y3M8 1113 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 PCDHGA5Q9Y5G8 931 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 SDK1Q7Z5N4 2213 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 RALGAPA1Q6GYQ0 2036 aa22.75■■□□□ 1.23
CCDC28B-201ENST00000373602 ALDH1A2O94788 518 aa22.74■■□□□ 1.23
CCDC28B-201ENST00000373602 ATXN1P54253 815 aaKnown RBP22.74■■□□□ 1.23
CCDC28B-201ENST00000373602 STILQ15468 1287 aa22.74■■□□□ 1.23
CCDC28B-201ENST00000373602 CNGA2Q16280 664 aa22.74■■□□□ 1.23
CCDC28B-201ENST00000373602 TRMT11Q7Z4G4 463 aaKnown RBP22.74■■□□□ 1.23
CCDC28B-201ENST00000373602 SCML4Q8N228 414 aa22.74■■□□□ 1.23
CCDC28B-201ENST00000373602 ZNF513Q8N8E2 541 aaPredicted RBP22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms