RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 ZNF579Q8NAF0 562 aaKnown RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 DUSP12Q9UNI6 340 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 CBX4O00257 560 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 HBP1O60381 514 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 PLA2G6O60733 806 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 SMNDC1O75940 238 aaKnown RBP eCLIP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 PAICSP22234 425 aaKnown RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 KLRC2P26717 231 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 RPL10AP62906 217 aaKnown RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 MKRN4PQ13434 485 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 ACOX1Q15067 660 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 GLRA4Q5JXX5 417 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 TRIQKQ629K1 86 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 CYP4X1Q8N118 509 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 ATG16L2Q8NAA4 619 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 BBS4Q96RK4 519 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 KLHL3Q9UH77 587 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 SCAF8Q9UPN6 1271 aaKnown RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 MORC2Q9Y6X9 1032 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 ARHGEF28Q8N1W1 1705 aaKnown RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 SLC12A8A0AV02 714 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 PDXKO00764 312 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 PABPC1P11940 636 aaKnown RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 SERPINB5P36952 375 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 NPY2RP49146 381 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 NT5DC3Q86UY8 548 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 AGGF1Q8N302 714 aaeCLIP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 UTP15Q8TED0 518 aaKnown RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 SERPINB12Q96P63 405 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 GSG1L2A8MUP6 293 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 CRTAMO95727 393 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 HLA-DRAP01903 254 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 CCNG1P51959 295 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 TRAF2Q12933 501 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 STX5Q13190 355 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 TOB2Q14106 344 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 FNDC3BQ53EP0 1204 aaKnown RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 C9orf131Q5VYM1 1079 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 DSELQ8IZU8 1212 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 HASPINQ8TF76 798 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 DTNBP1Q96EV8 351 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 MANSC1Q9H8J5 431 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 SH3BP4Q9P0V3 963 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 CHORDC1Q9UHD1 332 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 ACO1P21399 889 aaKnown RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 FDFT1P37268 417 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 CPA2P48052 419 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 RCAN1P53805 252 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 CASP12Q6UXS9 341 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 C4orf22Q6V702 233 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 COLGALT2Q8IYK4 626 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 ARRDC4Q8NCT1 418 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 FAM151AQ8WW52 585 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 ACOX2Q99424 681 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 ELL3Q9HB65 397 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 ZNF112Q9UJU3 913 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 ZMYND8Q9ULU4 1186 aaPredicted RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 AAR2Q9Y312 384 aaKnown RBP10.48□□□□□ -0.73
CLIP1-202ENST00000358808 WDR19Q8NEZ3 1342 aa10.48□□□□□ -0.73
CLIP1-202ENST00000358808 NR5A2O00482 541 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 UQCRBP14927 111 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 ATP6V1B1P15313 513 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 CYP2A7P20853 494 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 SLC30A9Q6PML9 568 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 GPR141Q7Z602 305 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 GUF1Q8N442 669 aaKnown RBP10.47□□□□□ -0.73
CLIP1-202ENST00000358808 IPCEF1Q8WWN9 437 aaPredicted RBP10.47□□□□□ -0.73
CLIP1-202ENST00000358808 TRIM63Q969Q1 353 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 NSUN4Q96CB9 384 aaKnown RBP10.47□□□□□ -0.73
CLIP1-202ENST00000358808 NARS2Q96I59 477 aaKnown RBP10.47□□□□□ -0.73
CLIP1-202ENST00000358808 ADGRE3Q9BY15 652 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 DEFB129Q9H1M3 183 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.47□□□□□ -0.73
CLIP1-202ENST00000358808 CCNT2O60583 730 aaKnown RBP10.47□□□□□ -0.73
CLIP1-202ENST00000358808 CST8O60676 142 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 FAM20BO75063 409 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 HIST1H2ABP04908 130 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 ITGB6P18564 788 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 PLD1Q13393 1074 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 HIST3H2AQ7L7L0 130 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 KRT74Q7RTS7 529 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 CBWD2Q8IUF1 395 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 HIST1H2ACQ93077 130 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 PPP1R10Q96QC0 940 aaKnown RBP10.47□□□□□ -0.73
CLIP1-202ENST00000358808 CGRRF1Q99675 332 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 NEK6Q9HC98 313 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 CYP4F12Q9HCS2 524 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 KLC4Q9NSK0 619 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 UBQLN1Q9UMX0 589 aaKnown RBP10.47□□□□□ -0.73
CLIP1-202ENST00000358808 ADGRG1Q9Y653 693 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 B3GAT3O94766 335 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 IFNA16P05015 189 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 HSPA13P48723 471 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 CLK3P49761 638 aaKnown RBP10.47□□□□□ -0.73
CLIP1-202ENST00000358808 SKP1P63208 163 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 HHIPL2Q6UWX4 724 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 NANOGNBQ7Z5D8 188 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 PDCD10Q9BUL8 212 aa10.47□□□□□ -0.73
CLIP1-202ENST00000358808 PDGFCQ9NRA1 345 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms