RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.41□□□□□ -1.06
ATG4A-201ENST00000343524 RIN3Q8TB24 985 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 CALML6Q8TD86 181 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 SLC20A1Q8WUM9 679 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 DCAKDQ8WVC6 231 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 CCDC124Q96CT7 223 aaKnown RBP8.41□□□□□ -1.06
ATG4A-201ENST00000343524 PWWP2AQ96N64 755 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 SRPK1Q96SB4 655 aaKnown RBP8.41□□□□□ -1.06
ATG4A-201ENST00000343524 GLT8D2Q9H1C3 349 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 PCDH9Q9HC56 1237 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 STK39Q9UEW8 545 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 VPS28Q9UK41 221 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 NIP7Q9Y221 180 aaKnown RBP eCLIP8.41□□□□□ -1.06
ATG4A-201ENST00000343524 IFT52Q9Y366 437 aa8.41□□□□□ -1.06
ATG4A-201ENST00000343524 ZNF804BA4D1E1 1349 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 CLUHO75153 1309 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 LTBP3Q9NS15 1303 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.4□□□□□ -1.06
ATG4A-201ENST00000343524 ARHGEF37A1IGU5 675 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 DYTNA2CJ06 578 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 TRIM64CA6NLI5 447 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 ZNF839A8K0R7 811 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 CENPBD1B2RD01 187 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 ERVV-2B6SEH9 535 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 PSMD12O00232 456 aaPredicted RBP8.4□□□□□ -1.06
ATG4A-201ENST00000343524 GIPC1O14908 333 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 KMOO15229 486 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 SNAP91O60641 907 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 KRT5P13647 590 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 ARSEP51690 589 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 PRSS12P56730 875 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 NLRP11P59045 1033 aaKnown RBP8.4□□□□□ -1.06
ATG4A-201ENST00000343524 YWHAGP61981 247 aaKnown RBP eCLIP8.4□□□□□ -1.06
ATG4A-201ENST00000343524 TUBA1BP68363 451 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 SLC25A3Q00325 362 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 TFAP4Q01664 338 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 PTK7Q13308 1070 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 SMUG1Q53HV7 270 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 DCAF6Q58WW2 860 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 C6orf183Q5T699 404 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 RNASEH2BQ5TBB1 312 aaKnown RBP8.4□□□□□ -1.06
ATG4A-201ENST00000343524 EGFLAMQ63HQ2 1017 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 SCARA3Q6AZY7 606 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 PPP1R2P3Q6NXS1 205 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 TUBA1AQ71U36 451 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 SAPCD2Q86UD0 394 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 ITIH5Q86UX2 942 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 NLRP10Q86W26 655 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 MCF2L2Q86YR7 1114 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 ATP6V0D2Q8N8Y2 350 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 EXD1Q8NHP7 514 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 NEDD1Q8NHV4 660 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 TBC1D15Q8TC07 691 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 ADAMTS16Q8TE57 1224 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 EPS8L1Q8TE68 723 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 RPGRQ92834 1020 aaKnown RBP8.4□□□□□ -1.06
ATG4A-201ENST00000343524 CNDP2Q96KP4 475 aaKnown RBP8.4□□□□□ -1.06
ATG4A-201ENST00000343524 DOK1Q99704 481 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 RTKNQ9BST9 563 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 FRMD8P1Q9BZ68 369 aaPredicted RBP8.4□□□□□ -1.06
ATG4A-201ENST00000343524 DCP1AQ9NPI6 582 aaPredicted RBP8.4□□□□□ -1.06
ATG4A-201ENST00000343524 THAP1Q9NVV9 213 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 DNAJC28Q9NX36 388 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 NCKIPSDQ9NZQ3 722 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 HACD3Q9P035 362 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 SIRPGQ9P1W8 387 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 SEL1LQ9UBV2 794 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 RIMS3Q9UJD0 308 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 ANAPC7Q9UJX3 599 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 DRG1Q9Y295 367 aaKnown RBP8.4□□□□□ -1.06
ATG4A-201ENST00000343524 NOX1Q9Y5S8 564 aa8.4□□□□□ -1.06
ATG4A-201ENST00000343524 MYH11P35749 1972 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 FOXN3O00409 490 aaPredicted RBP8.39□□□□□ -1.07
ATG4A-201ENST00000343524 UGT1A9O60656 530 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 RPS6KA4O75676 772 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 DGKIO75912 1065 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 KRT37O76014 449 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 FARP2O94887 1054 aaPredicted RBP8.39□□□□□ -1.07
ATG4A-201ENST00000343524 KRT75O95678 551 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 APOEP02649 317 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 PROCP04070 461 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 INHBBP09529 407 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 TSPY3P0CV98 308 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 TSPY8P0CW00 308 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 RALAP11233 206 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 UGT1A6P19224 532 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 UGT1A1P22309 533 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 UGT1A4P22310 534 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 GLRA2P23416 452 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 UGT1A3P35503 534 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 UGT1A5P35504 534 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 CASP4P49662 377 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 ERFP50548 548 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 BST1Q10588 318 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 BFSP1Q12934 665 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 GPS1Q13098 491 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 PSMD6Q15008 389 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 ECM1Q16610 540 aa8.39□□□□□ -1.07
ATG4A-201ENST00000343524 TTC39BQ5VTQ0 682 aaPredicted RBP8.39□□□□□ -1.07
ATG4A-201ENST00000343524 TMEM214Q6NUQ4 689 aaKnown RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms