RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 RETP07949 1114 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 DCKP27707 260 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 STAT3P40763 770 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 SERPINH1P50454 418 aaKnown RBP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 GPR85P60893 370 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 COPZ1P61923 177 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 POLR2GP62487 172 aaKnown RBP eCLIP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 IFI35P80217 286 aaPredicted RBP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ADGRE1Q14246 886 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 GRIK5Q16478 980 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 RNF19BQ6ZMZ0 732 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 NUDCD3Q8IVD9 361 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 MICU2Q8IYU8 434 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 SLC38A6Q8IZM9 456 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 FNDC5Q8NAU1 212 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 TMEM87BQ96K49 555 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 C1orf74Q96LT6 269 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 BEGAINQ9BUH8 593 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 PITHD1Q9GZP4 211 aaPredicted RBP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 EPS8L2Q9H6S3 715 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 MMRN2Q9H8L6 949 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 JMJD4Q9H9V9 463 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 B3GNT2Q9NY97 397 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 FBXO40Q9UH90 709 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 CPSF3Q9UKF6 684 aaKnown RBP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ITGA11Q9UKX5 1188 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 OR5K4A6NMS3 321 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 H0Y858 1186 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 FCHO1O14526 889 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 AKAP10O43572 662 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 CCNE2O96020 404 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 THRAP10827 490 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 CD40LGP29965 261 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 SERPINB5P36952 375 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 METAP2P50579 478 aaKnown RBP eCLIP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 HAND2P61296 217 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 EPS8Q12929 822 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 MAPK7Q13164 816 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 TCIRG1Q13488 830 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 SLC18A3Q16572 532 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF181Q2M3W8 571 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 MPP7Q5T2T1 576 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 CNNM4Q6P4Q7 775 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ILDR1Q86SU0 546 aaPredicted RBP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 DNAAF5Q86Y56 855 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 KIF18BQ86Y91 864 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ZSCAN29Q8IWY8 852 aaPredicted RBP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 KBTBD2Q8IY47 623 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 DNAAF3Q8N9W5 541 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 TBC1D15Q8TC07 691 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 C12orf43Q96C57 262 aaKnown RBP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 DACH2Q96NX9 599 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 C17orf62Q9BQA9 187 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ADAM7Q9H2U9 754 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 TRABDQ9H4I3 376 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 CXorf21Q9HAI6 301 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 SDHAF3Q9NRP4 125 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 AMACRQ9UHK6 382 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 NEO1Q92859 1461 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 KLF11O14901 512 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 BUB1O43683 1085 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 TRIM3O75382 744 aaPredicted RBP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ADAMTS2O95450 1211 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 FTCDO95954 541 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 GYS1P13807 737 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ITGA2P17301 1181 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 C4BPBP20851 252 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 CA4P22748 312 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 IDUAP35475 653 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 HNF1BP35680 557 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 NR2C2P49116 596 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 TAP1Q03518 808 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 VAC14Q08AM6 782 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 RRP1BQ14684 758 aaKnown RBP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 UGP2Q16851 508 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 SHEQ5VZ18 495 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 LLGL2Q6P1M3 1020 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 WDR59Q6PJI9 974 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 IKBIPQ70UQ0 350 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 KCNK18Q7Z418 384 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 PQLC1Q8N2U9 271 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 MAGEB6Q8N7X4 407 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 P2RX5Q93086 422 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 FAM105AQ9NUU6 356 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 PSME2Q9UL46 239 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ATP7AQ04656 1500 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 A1BGP04217 495 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 GNPDA1P46926 289 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 AQP4P55087 323 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 LRRC74AQ0VAA2 488 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ANGPT1Q15389 498 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ZNF827Q17R98 1081 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 IGSF11Q5DX21 431 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 TTC33Q6PID6 262 aaPredicted RBP4.28□□□□□ -1.72
NEDD4-201ENST00000338963 ATG9AQ7Z3C6 839 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 LIMS2Q7Z4I7 341 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 NLRP10Q86W26 655 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 TBC1D19Q8N5T2 526 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 TEX19Q8NA77 164 aa4.28□□□□□ -1.72
NEDD4-201ENST00000338963 SVIPQ8NHG7 77 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms