RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 CPA5Q8WXQ8 436 aa17.24■□□□□ 0.35
PDLIM1-201ENST00000329399 RUBCNQ92622 972 aa17.24■□□□□ 0.35
PDLIM1-201ENST00000329399 FUBP3Q96I24 572 aaKnown RBP eCLIP17.24■□□□□ 0.35
PDLIM1-201ENST00000329399 TNIP3Q96KP6 325 aa17.24■□□□□ 0.35
PDLIM1-201ENST00000329399 HEXIM2Q96MH2 286 aaKnown RBP17.24■□□□□ 0.35
PDLIM1-201ENST00000329399 ASB16Q96NS5 453 aa17.24■□□□□ 0.35
PDLIM1-201ENST00000329399 KCNK16Q96T55 309 aa17.24■□□□□ 0.35
PDLIM1-201ENST00000329399 C1QTNF1Q9BXJ1 281 aa17.24■□□□□ 0.35
PDLIM1-201ENST00000329399 CARD9Q9H257 536 aa17.24■□□□□ 0.35
PDLIM1-201ENST00000329399 ATXN3LQ9H3M9 355 aa17.24■□□□□ 0.35
PDLIM1-201ENST00000329399 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.24■□□□□ 0.35
PDLIM1-201ENST00000329399 ALG6Q9Y672 507 aa17.24■□□□□ 0.35
PDLIM1-201ENST00000329399 ZFP37Q9Y6Q3 630 aaPredicted RBP17.24■□□□□ 0.35
PDLIM1-201ENST00000329399 PTPRDP23468 1912 aa17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 F5P12259 2224 aa17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 F8VP50 259 aa17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 BEST1O76090 585 aa17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 FTCDO95954 541 aa17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 BRD2P25440 801 aaKnown RBP17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 GRIK1P39086 918 aa17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 SIGLEC14Q08ET2 396 aa17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 PPP2R5EQ16537 467 aa17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 C4orf50Q6ZRC1 276 aa17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 FUKQ8N0W3 1084 aa17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 STK32AQ8WU08 396 aa17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 SLC46A2Q9BY10 475 aa17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 SMG9Q9H0W8 520 aaKnown RBP17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 CYLDQ9NQC7 956 aa17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 DUSP12Q9UNI6 340 aa17.23■□□□□ 0.35
PDLIM1-201ENST00000329399 MUC6Q6W4X9 2439 aa17.22■□□□□ 0.35
PDLIM1-201ENST00000329399 VPS13AQ96RL7 3174 aa17.22■□□□□ 0.35
PDLIM1-201ENST00000329399 CFHP08603 1231 aa17.22■□□□□ 0.35
PDLIM1-201ENST00000329399 MAN1A1P33908 653 aa17.22■□□□□ 0.35
PDLIM1-201ENST00000329399 PTP4A2Q12974 167 aa17.22■□□□□ 0.35
PDLIM1-201ENST00000329399 ZNF268Q14587 947 aaPredicted RBP17.22■□□□□ 0.35
PDLIM1-201ENST00000329399 ZNF394Q53GI3 561 aa17.22■□□□□ 0.35
PDLIM1-201ENST00000329399 ARHGAP17Q68EM7 881 aa17.22■□□□□ 0.35
PDLIM1-201ENST00000329399 ITIH5Q86UX2 942 aa17.22■□□□□ 0.35
PDLIM1-201ENST00000329399 ZMIZ2Q8NF64 920 aa17.22■□□□□ 0.35
PDLIM1-201ENST00000329399 ZSCAN18Q8TBC5 510 aaPredicted RBP17.22■□□□□ 0.35
PDLIM1-201ENST00000329399 FAM49BQ9NUQ9 324 aa17.22■□□□□ 0.35
PDLIM1-201ENST00000329399 COL4A3Q01955 1670 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 ZNF318Q5VUA4 2279 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 KRBA1A5PL33 1030 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 O00370 1275 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 CTNNA2P26232 953 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 GABRB2P47870 512 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 RPL10AP62906 217 aaKnown RBP17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 GRM2Q14416 872 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 VEPH1Q14D04 833 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 MAPRE1Q15691 268 aaKnown RBP17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 GLE1Q53GS7 698 aaKnown RBP17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 GPR158Q5T848 1215 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 TXNDC8Q6A555 127 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 VSTM1Q6UX27 236 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 FAM35AQ86V20 835 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 ARID3BQ8IVW6 561 aaPredicted RBP17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 UBALD2Q8IYN6 164 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 RASGEF1CQ8N431 466 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 MMGT1Q8N4V1 131 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 LEMD2Q8NC56 503 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 C3orf20Q8ND61 904 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 SLC2A14Q8TDB8 520 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 TFAP2BQ92481 460 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 SLC22A12Q96S37 553 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 SMOQ99835 787 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 ARGLU1Q9NWB6 273 aaPredicted RBP17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 IP6K2Q9UHH9 426 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 WDR87Q6ZQQ6 2873 aa17.21■□□□□ 0.35
PDLIM1-201ENST00000329399 MYO15AQ9UKN7 3530 aa17.21■□□□□ 0.34
PDLIM1-201ENST00000329399 GREB1Q4ZG55 1949 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 KCNK3O14649 394 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 PRAMEF12O95522 483 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 CALCAP01258 141 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 CSH1P0DML2 217 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 CSH2P0DML3 217 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 RRM1P23921 792 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 MAMLD1Q13495 774 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 ACAP1Q15027 740 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 TAF12Q16514 161 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 VITQ6UXI7 678 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 MTERF4Q7Z6M4 381 aaKnown RBP17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 ZDHHC17Q8IUH5 632 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 SCAMP5Q8TAC9 235 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 RIN3Q8TB24 985 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 SMARCD2Q92925 531 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 NXPE3Q969Y0 559 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 C18orf8Q96DM3 657 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 SPATA17Q96L03 361 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 MYRFLQ96LU7 910 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 CYP2S1Q96SQ9 504 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 C11orf70Q9BRQ4 267 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 SLITRK6Q9H5Y7 841 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 HESX1Q9UBX0 185 aa17.2■□□□□ 0.34
PDLIM1-201ENST00000329399 TARSL2A2RTX5 802 aaKnown RBP17.19■□□□□ 0.34
PDLIM1-201ENST00000329399 PRR33A8MZF0 331 aa17.19■□□□□ 0.34
PDLIM1-201ENST00000329399 SRGAP2O75044 1071 aa17.19■□□□□ 0.34
PDLIM1-201ENST00000329399 ECI2O75521 394 aa17.19■□□□□ 0.34
PDLIM1-201ENST00000329399 NPR3P17342 541 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms