RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ZBTB49Q6ZSB9 765 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 POLR1BQ9H9Y6 1135 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 AVENQ9NQS1 362 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-201ENST00000295550 SKAP2O75563 359 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-201ENST00000295550 MAGEA10P43363 369 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-201ENST00000295550 TSHZ1Q6ZSZ6 1077 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 SLC20A1Q8WUM9 679 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 TEX13BQ9BXU2 312 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 ROBO3Q96MS0 1386 aa10.16□□□□□ -0.78
COL6A3-201ENST00000295550 MYL3P08590 195 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 JAK1P23458 1154 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 MAPKAPK2P49137 400 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 PTK6Q13882 451 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 CLEC16AQ2KHT3 1053 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 TAF2Q6P1X5 1199 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 VN1R5Q7Z5H4 357 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 C11orf96Q7Z7L8 435 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 TMEM139Q8IV31 216 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 FAM71DQ8N9W8 422 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 MAGED4Q96JG8 741 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 DDX50Q9BQ39 737 aaKnown RBP10.15□□□□□ -0.78
COL6A3-201ENST00000295550 PRRG3Q9BZD7 231 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 TAGLN3Q9UI15 199 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 TMCC3Q9ULS5 477 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 DUOX1Q9NRD9 1551 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 MED26O95402 600 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 SMTNL2Q2TAL5 461 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 SEPT1Q8WYJ6 367 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 CNOT3O75175 753 aaKnown RBP10.15□□□□□ -0.78
COL6A3-201ENST00000295550 PLA2G4FQ68DD2 849 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 WDR36Q8NI36 951 aaKnown RBP10.15□□□□□ -0.78
COL6A3-201ENST00000295550 PAK5Q9P286 719 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 UBA2Q9UBT2 640 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-201ENST00000295550 HEATR9A2RTY3 570 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 LSM8O95777 96 aaKnown RBP10.15□□□□□ -0.78
COL6A3-201ENST00000295550 AMPD2Q01433 879 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 BTBD8Q5XKL5 378 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 ZNF560Q96MR9 790 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 KLF6Q99612 283 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-201ENST00000295550 HEY2Q9UBP5 337 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 POLG2Q9UHN1 485 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 MAPTP10636 758 aaKnown RBP10.15□□□□□ -0.78
COL6A3-201ENST00000295550 OVGP1Q12889 678 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 TMEM132DQ14C87 1099 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 C4orf22Q6V702 233 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 NANOGNBQ7Z5D8 188 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 MTDHQ86UE4 582 aaKnown RBP10.15□□□□□ -0.78
COL6A3-201ENST00000295550 LRRC71Q8N4P6 559 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 C1orf131Q8NDD1 294 aaKnown RBP10.15□□□□□ -0.78
COL6A3-201ENST00000295550 ZNF333Q96JL9 665 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 YIPF2Q9BWQ6 316 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 MAP3K20Q9NYL2 800 aaKnown RBP10.15□□□□□ -0.78
COL6A3-201ENST00000295550 PSMB9P28065 219 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 PBX1P40424 430 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 FOXR2Q6PJQ5 311 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 LRRC55Q6ZSA7 311 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 ZNF720Q7Z2F6 126 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 MICALL2Q8IY33 904 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 SYTL1Q8IYJ3 562 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 GPRASP2Q96D09 838 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 ZDHHC15Q96MV8 337 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 F8W810 466 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 FAM83EQ2M2I3 478 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 ZNF57Q68EA5 555 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-201ENST00000295550 STYK1Q6J9G0 422 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 ZNF483Q8TF39 744 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-201ENST00000295550 PDCD10Q9BUL8 212 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 RXFP1Q9HBX9 757 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 PRDM5Q9NQX1 630 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-201ENST00000295550 PRKAG2Q9UGJ0 569 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 VPS9D1Q9Y2B5 631 aa10.15□□□□□ -0.78
COL6A3-201ENST00000295550 NME5P56597 212 aa10.15□□□□□ -0.79
COL6A3-201ENST00000295550 ERVK-9P63128 1117 aa10.15□□□□□ -0.79
COL6A3-201ENST00000295550 TWF1Q12792 350 aa10.15□□□□□ -0.79
COL6A3-201ENST00000295550 WDR72Q3MJ13 1102 aa10.15□□□□□ -0.79
COL6A3-201ENST00000295550 SAMD3Q8N6K7 520 aa10.15□□□□□ -0.79
COL6A3-201ENST00000295550 FEZF2Q8TBJ5 459 aa10.15□□□□□ -0.79
COL6A3-201ENST00000295550 VPS33BQ9H267 617 aa10.15□□□□□ -0.79
COL6A3-201ENST00000295550 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.15□□□□□ -0.79
COL6A3-201ENST00000295550 ZNF624Q9P2J8 865 aaPredicted RBP10.15□□□□□ -0.79
COL6A3-201ENST00000295550 GRID1Q9ULK0 1009 aa10.15□□□□□ -0.79
COL6A3-201ENST00000295550 PHTF1Q9UMS5 762 aa10.15□□□□□ -0.79
COL6A3-201ENST00000295550 PHGDHO43175 533 aaKnown RBP10.15□□□□□ -0.79
COL6A3-201ENST00000295550 MTM1Q13496 603 aa10.15□□□□□ -0.79
COL6A3-201ENST00000295550 IPMKQ8NFU5 416 aa10.15□□□□□ -0.79
COL6A3-201ENST00000295550 CAPSLQ8WWF8 208 aa10.15□□□□□ -0.79
COL6A3-201ENST00000295550 BLOC1S4Q9NUP1 217 aa10.15□□□□□ -0.79
COL6A3-201ENST00000295550 ATP6V1G2O95670 118 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 AVPR1AP37288 418 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 APBB2Q92870 758 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 ZC3H4Q9UPT8 1303 aaKnown RBP10.14□□□□□ -0.79
COL6A3-201ENST00000295550 AHCYL1O43865 530 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 HNRNPH3P31942 346 aaKnown RBP10.14□□□□□ -0.79
COL6A3-201ENST00000295550 EXD1Q8NHP7 514 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 SLC10A4Q96EP9 437 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 PNMA5Q96PV4 448 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 FAM118BQ9BPY3 351 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 TINF2Q9BSI4 451 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 C1orf50Q9BV19 199 aa10.14□□□□□ -0.79
COL6A3-201ENST00000295550 COL14A1Q05707 1796 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms