RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 PRR23D1E9PI22 279 aaPredicted RBP11.8□□□□□ -0.52
USP53-201ENST00000274030 BAIAP3O94812 1187 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 PRR23D2P0DMB1 279 aaPredicted RBP11.8□□□□□ -0.52
USP53-201ENST00000274030 GHRP10912 638 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 VHLP40337 213 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 CDKAL1Q5VV42 579 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 SLC26A11Q86WA9 606 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 PHACTR4Q8IZ21 702 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 ACTRT1Q8TDG2 376 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 USP13Q92995 863 aaPredicted RBP11.8□□□□□ -0.52
USP53-201ENST00000274030 MAGED4Q96JG8 741 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 MAGEB18Q96M61 343 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 C10orf88Q9H8K7 445 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 L2HGDHQ9H9P8 463 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 EFCAB1Q9HAE3 211 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 STARD7Q9NQZ5 370 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 NUDT5Q9UKK9 219 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.8□□□□□ -0.52
USP53-201ENST00000274030 ZNF682O95780 498 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 CPA3P15088 417 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 HALP42357 657 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 CNTN2Q02246 1040 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 BST2Q10589 180 aaKnown RBP11.8□□□□□ -0.52
USP53-201ENST00000274030 ACOX2Q99424 681 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 TMEM120AQ9BXJ8 343 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 ZNF518BQ9C0D4 1074 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 GBA2Q9HCG7 927 aaPredicted RBP11.8□□□□□ -0.52
USP53-201ENST00000274030 INO80Q9ULG1 1556 aaPredicted RBP11.8□□□□□ -0.52
USP53-201ENST00000274030 TISP43B9A030 160 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 KCNK1O00180 336 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 KATNA1O75449 491 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 NPM3O75607 178 aaKnown RBP11.8□□□□□ -0.52
USP53-201ENST00000274030 SLITRK3O94933 977 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 GLP2RO95838 553 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 THRAP10827 490 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 STARD3Q14849 445 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 GRIK4Q16099 956 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 TEX9Q8N6V9 391 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 LPCAT1Q8NF37 534 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 VANGL2Q9ULK5 521 aa11.8□□□□□ -0.52
USP53-201ENST00000274030 LOC102724159A0A0B4J2E5 919 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 RGS5O15539 181 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 CALCAP01258 141 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 KRT8P05787 483 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 ATP6V1B2P21281 511 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 PWP2Q15269 919 aaKnown RBP11.79□□□□□ -0.52
USP53-201ENST00000274030 MCOLN2Q8IZK6 566 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 SYT15Q9BQS2 421 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 DDX4Q9NQI0 724 aaKnown RBP11.79□□□□□ -0.52
USP53-201ENST00000274030 PDGFCQ9NRA1 345 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 ITGALP20701 1170 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 AMPD1P23109 780 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 CYLC2Q14093 348 aaPredicted RBP11.79□□□□□ -0.52
USP53-201ENST00000274030 CCNG2Q16589 344 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 ZNF284Q2VY69 593 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 FIGNQ5HY92 759 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 WDR93Q6P2C0 686 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 L1RE1Q9UN81 338 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 NAALADL1Q9UQQ1 740 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 CEP152O94986 1710 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 A8MX80 341 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 SERPINI2O75830 405 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 GSNP06396 782 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 DARSP14868 501 aaKnown RBP11.79□□□□□ -0.52
USP53-201ENST00000274030 NQO1P15559 274 aaKnown RBP11.79□□□□□ -0.52
USP53-201ENST00000274030 ELK3P41970 407 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 LHX1P48742 406 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 RASA2Q15283 850 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 ATP6AP1LQ52LC2 224 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 OVOS1Q6IE37 1185 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 RINLQ6ZS11 566 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 HDAC7Q8WUI4 952 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 PNMA5Q96PV4 448 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 A0A087X0B3 334 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 HNRNPRO43390 633 aaKnown RBP11.79□□□□□ -0.52
USP53-201ENST00000274030 ALDH2P05091 517 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 PYGMP11217 842 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 SSTR1P30872 391 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 ALFQ53S48 1182 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 SCUBE1Q8IWY4 988 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 TDRD5Q8NAT2 981 aaKnown RBP11.79□□□□□ -0.52
USP53-201ENST00000274030 SYTL2Q9HCH5 934 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 GTF2A1LQ9UNN4 478 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 TCRBV5S4A2TA0A5A2 114 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 PDHXO00330 501 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 GSTM1P09488 218 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 CCR1P32246 355 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 AGKQ53H12 422 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 ZFPM1Q8IX07 1006 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 TNIP2Q8NFZ5 429 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 VMP1Q96GC9 406 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 APPL1Q9UKG1 709 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 PTPRMP28827 1452 aa11.79□□□□□ -0.52
USP53-201ENST00000274030 H3BQF6 201 aa11.78□□□□□ -0.52
USP53-201ENST00000274030 EML1O00423 815 aa11.78□□□□□ -0.52
USP53-201ENST00000274030 PQBP1O60828 265 aaKnown RBP11.78□□□□□ -0.52
USP53-201ENST00000274030 FGFR1P11362 822 aa11.78□□□□□ -0.52
USP53-201ENST00000274030 CHRNB3Q05901 458 aa11.78□□□□□ -0.52
USP53-201ENST00000274030 CNTN1Q12860 1018 aa11.78□□□□□ -0.52
USP53-201ENST00000274030 MMRN1Q13201 1228 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms