RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 PCNX4Q63HM2 1172 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 USP38Q8NB14 1042 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.62□□□□□ -0.23
COL1A1-201ENST00000225964 AKAP7Q9P0M2 348 aaPredicted RBP13.62□□□□□ -0.23
COL1A1-201ENST00000225964 TUBGCP4Q9UGJ1 667 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 TRIM17Q9Y577 477 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 RPLP2P05387 115 aaKnown RBP13.62□□□□□ -0.23
COL1A1-201ENST00000225964 SOX6P35712 828 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 BST2Q10589 180 aaKnown RBP13.62□□□□□ -0.23
COL1A1-201ENST00000225964 CBWD3Q5JTY5 395 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 CBWD5Q5RIA9 395 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 TRPM8Q7Z2W7 1104 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 SMPD4Q9NXE4 827 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 POLLQ9UGP5 575 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 SNCAIPQ9Y6H5 919 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 RENBPP51606 427 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 TBX4P57082 545 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 ITGA9Q13797 1035 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 DEFB132Q7Z7B7 95 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 ATG4AQ8WYN0 398 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 KCNB2Q92953 911 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 MAP3K14Q99558 947 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 CCDC85CA6NKD9 419 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 CXCL8P10145 99 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 STIP1P31948 543 aaKnown RBP13.62□□□□□ -0.23
COL1A1-201ENST00000225964 STX5Q13190 355 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 CAPRIN2Q6IMN6 1127 aaKnown RBP13.62□□□□□ -0.23
COL1A1-201ENST00000225964 CYP20A1Q6UW02 462 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 WDR49Q8IV35 697 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 DPP10Q8N608 796 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 SLC16A10Q8TF71 515 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 CCT8L2Q96SF2 557 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 ELOVL6Q9H5J4 265 aa13.62□□□□□ -0.23
COL1A1-201ENST00000225964 MRPL42Q9Y6G3 142 aaKnown RBP13.62□□□□□ -0.23
COL1A1-201ENST00000225964 A8MX80 341 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 TIMM44O43615 452 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 ATP6V1B2P21281 511 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 MLH1P40692 756 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 ATP6AP1LQ52LC2 224 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 OLFML2BQ68BL8 750 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 OVOS1Q6IE37 1185 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 ZNF544Q6NX49 715 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 ZNF786Q8N393 782 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 CELF6Q96J87 481 aaKnown RBP13.61□□□□□ -0.23
COL1A1-201ENST00000225964 EXO5Q9H790 373 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 TFR2Q9UP52 801 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 N6AMT1Q9Y5N5 214 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 XYLBO75191 536 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 CSNK2BP67870 215 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 RALGDSQ12967 914 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 CYLC2Q14093 348 aaPredicted RBP13.61□□□□□ -0.23
COL1A1-201ENST00000225964 COL23A1Q86Y22 540 aaPredicted RBP13.61□□□□□ -0.23
COL1A1-201ENST00000225964 PHACTR1Q9C0D0 580 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 RPRD1BQ9NQG5 326 aaKnown RBP13.61□□□□□ -0.23
COL1A1-201ENST00000225964 ERI2A8K979 691 aaKnown RBP13.61□□□□□ -0.23
COL1A1-201ENST00000225964 MTA2O94776 668 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 ARID3BQ8IVW6 561 aaPredicted RBP13.61□□□□□ -0.23
COL1A1-201ENST00000225964 CDK20Q8IZL9 346 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 TBC1D23Q9NUY8 699 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 C1orf167Q5SNV9 1468 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 CAPN1P07384 714 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 SLC2A4P14672 509 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 TARSP26639 723 aaKnown RBP13.61□□□□□ -0.23
COL1A1-201ENST00000225964 OTUD4Q01804 1114 aaKnown RBP13.61□□□□□ -0.23
COL1A1-201ENST00000225964 CYP4Z2PQ8N1L4 340 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 DNAJC1Q96KC8 554 aaKnown RBP13.61□□□□□ -0.23
COL1A1-201ENST00000225964 ADI1Q9BV57 179 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 FRMD8Q9BZ67 464 aaPredicted RBP13.61□□□□□ -0.23
COL1A1-201ENST00000225964 SH3BP4Q9P0V3 963 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 IFNA14P01570 189 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 JCHAINP01591 159 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 GHRP10912 638 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 SOX10P56693 466 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 SLC29A2Q14542 456 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 TDRD5Q8NAT2 981 aaKnown RBP13.61□□□□□ -0.23
COL1A1-201ENST00000225964 COLGALT1Q8NBJ5 622 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 GPAMQ9HCL2 828 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 SEPT3Q9UH03 358 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 ITGA11Q9UKX5 1188 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 SOX13Q9UN79 622 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 BMP10O95393 424 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 CTSEP14091 401 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 CYP2F1P24903 491 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 NOS3P29474 1203 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 OR1E1P30953 314 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 ANTXR2P58335 489 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 TGFB2P61812 414 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 NCF4Q15080 339 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 SLC13A5Q86YT5 568 aaPredicted RBP13.61□□□□□ -0.23
COL1A1-201ENST00000225964 ISCUQ9H1K1 167 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 XPNPEP3Q9NQH7 507 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 POLR1DQ9Y2S0 133 aa13.61□□□□□ -0.23
COL1A1-201ENST00000225964 LINC00854A0A1B0GVQ3 168 aa13.6□□□□□ -0.23
COL1A1-201ENST00000225964 CLTBP09497 229 aa13.6□□□□□ -0.23
COL1A1-201ENST00000225964 CNPP09543 421 aaKnown RBP13.6□□□□□ -0.23
COL1A1-201ENST00000225964 SERPINB3P29508 390 aa13.6□□□□□ -0.23
COL1A1-201ENST00000225964 CHRNB3Q05901 458 aa13.6□□□□□ -0.23
COL1A1-201ENST00000225964 TRIM32Q13049 653 aa13.6□□□□□ -0.23
COL1A1-201ENST00000225964 BOP1Q14137 746 aaKnown RBP13.6□□□□□ -0.23
COL1A1-201ENST00000225964 ZIM3Q96PE6 472 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms