RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 DHX35Q9H5Z1 703 aaKnown RBP15.49■□□□□ 0.07
CCDC47-201ENST00000225726 NAALADL1Q9UQQ1 740 aa15.49■□□□□ 0.07
CCDC47-201ENST00000225726 FAN1Q9Y2M0 1017 aa15.49■□□□□ 0.07
CCDC47-201ENST00000225726 MICAL3Q7RTP6 2002 aa15.49■□□□□ 0.07
CCDC47-201ENST00000225726 FNDC1Q4ZHG4 1894 aaPredicted RBP15.49■□□□□ 0.07
CCDC47-201ENST00000225726 M0QYT0 321 aa15.49■□□□□ 0.07
CCDC47-201ENST00000225726 SLC11A1P49279 550 aa15.49■□□□□ 0.07
CCDC47-201ENST00000225726 PMS2P54278 862 aa15.49■□□□□ 0.07
CCDC47-201ENST00000225726 PQLC3Q8N755 202 aa15.49■□□□□ 0.07
CCDC47-201ENST00000225726 GOLGA6L1Q8N7Z2 621 aa15.49■□□□□ 0.07
CCDC47-201ENST00000225726 TMEM121Q9BTD3 319 aa15.49■□□□□ 0.07
CCDC47-201ENST00000225726 TSPYL1Q9H0U9 437 aa15.49■□□□□ 0.07
CCDC47-201ENST00000225726 MARCH5Q9NX47 278 aa15.49■□□□□ 0.07
CCDC47-201ENST00000225726 TBX21Q9UL17 535 aa15.49■□□□□ 0.07
CCDC47-201ENST00000225726 USP3Q9Y6I4 520 aa15.49■□□□□ 0.07
CCDC47-201ENST00000225726 TBKBP1A7MCY6 615 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 GOLGA8KD6RF30 607 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 SGK1O00141 431 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 NDC80O14777 642 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 POLR3GO15318 223 aaPredicted RBP15.48■□□□□ 0.07
CCDC47-201ENST00000225726 VPS41P49754 854 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 BCAR1P56945 870 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 PITX1P78337 314 aaPredicted RBP15.48■□□□□ 0.07
CCDC47-201ENST00000225726 DEUP1Q05D60 604 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 VARS2Q5ST30 1063 aaKnown RBP15.48■□□□□ 0.07
CCDC47-201ENST00000225726 IZUMO3Q5VZ72 239 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 FBXO46Q6PJ61 603 aaPredicted RBP15.48■□□□□ 0.07
CCDC47-201ENST00000225726 DEFB128Q7Z7B8 93 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 RIN2Q8WYP3 895 aaPredicted RBP15.48■□□□□ 0.07
CCDC47-201ENST00000225726 P3H4Q92791 437 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 TRIM62Q9BVG3 475 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 MTMR10Q9NXD2 777 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 VWA8A3KMH1 1905 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 RNF40O75150 1001 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 MRPL58Q14197 206 aaKnown RBP15.48■□□□□ 0.07
CCDC47-201ENST00000225726 PPP6R3Q5H9R7 873 aaPredicted RBP15.48■□□□□ 0.07
CCDC47-201ENST00000225726 FAM131BQ86XD5 332 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 PCDH19Q8TAB3 1148 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 DIS3LQ8TF46 1054 aaKnown RBP15.48■□□□□ 0.07
CCDC47-201ENST00000225726 PGAP3Q96FM1 320 aaPredicted RBP15.48■□□□□ 0.07
CCDC47-201ENST00000225726 RCOR3Q9P2K3 495 aaPredicted RBP15.48■□□□□ 0.07
CCDC47-201ENST00000225726 RSPH14Q9UHP6 348 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 OR4Q2P0C623 313 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 ZFXP17010 805 aaPredicted RBP15.48■□□□□ 0.07
CCDC47-201ENST00000225726 CYP2F1P24903 491 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 NFE2Q16621 373 aaPredicted RBP15.48■□□□□ 0.07
CCDC47-201ENST00000225726 SKIDA1Q1XH10 827 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 CNKSR3Q6P9H4 555 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 NPNTQ6UXI9 565 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 LRRC43Q8N309 656 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 PLD5Q8N7P1 536 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 ANKLE1Q8NAG6 615 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 SLC7A14Q8TBB6 771 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 FUBP3Q96I24 572 aaKnown RBP eCLIP15.48■□□□□ 0.075e-10■□□□□ 9.3
CCDC47-201ENST00000225726 SLC9A7Q96T83 725 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 ATP11BQ9Y2G3 1177 aa15.48■□□□□ 0.07
CCDC47-201ENST00000225726 SF3B1O75533 1304 aaKnown RBP eCLIP15.47■□□□□ 0.07
CCDC47-201ENST00000225726 OR6C75A6NL08 312 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 H0YGN5 161 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 DNALI1O14645 258 aaPredicted RBP15.47■□□□□ 0.07
CCDC47-201ENST00000225726 FGFR3P22607 806 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 RFC2P35250 354 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 AIF1P55008 147 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 ELAVL2Q12926 359 aaKnown RBP15.47■□□□□ 0.07
CCDC47-201ENST00000225726 P3H1Q32P28 736 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 FAM171A1Q5VUB5 890 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 PRUNE1Q86TP1 453 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 C10orf67Q8IYJ2 551 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 GLIS1Q8NBF1 620 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 RSAD2Q8WXG1 361 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 ARMC5Q96C12 935 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 PRDM16Q9HAZ2 1276 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 NFS1Q9Y697 457 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 NCAM1P13591 858 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 RARGP13631 454 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 GRIK1P39086 918 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 ROR1Q01973 937 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 CTXN3Q4LDR2 81 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 ZNF280DQ6N043 979 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 HIBCHQ6NVY1 386 aaPredicted RBP15.47■□□□□ 0.07
CCDC47-201ENST00000225726 C1orf228Q6PIY5 440 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 BEND5Q7L4P6 421 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 RBP3P10745 1247 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 ETS1P14921 441 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 NME3Q13232 169 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 GPR62Q9BZJ7 368 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 FOXP3Q9BZS1 431 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 PABPC3Q9H361 631 aaKnown RBP15.47■□□□□ 0.07
CCDC47-201ENST00000225726 PIGVQ9NUD9 493 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 TMEM39AQ9NV64 488 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 VPS18Q9P253 973 aa15.47■□□□□ 0.07
CCDC47-201ENST00000225726 GALTP07902 379 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 ZSCAN5DPP0CG00 497 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 GPS1Q13098 491 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 IKBKEQ14164 716 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 FUT10Q6P4F1 479 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 NTAN1Q96AB6 310 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 CSPG4P5Q96PW8 444 aa15.46■□□□□ 0.07
CCDC47-201ENST00000225726 ABI2Q9NYB9 513 aaPredicted RBP15.46■□□□□ 0.07
CCDC47-201ENST00000225726 SYNJ2BP-COX16A0A087WUM0 186 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms