RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 GRXCR2A6NFK2 248 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 C2CD4BA6NLJ0 364 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 PDGFRAP16234 1089 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 TUBP50607 506 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 PITX1P78337 314 aaPredicted RBP28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 EFEMP1Q12805 493 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 KIF5AQ12840 1032 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 CBX2Q14781 532 aaPredicted RBP28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 ARL14EPQ8N8R7 260 aaPredicted RBP28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 ADAM32Q8TC27 787 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 SLC22A12Q96S37 553 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 CYP2S1Q96SQ9 504 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 ANAPC7Q9UJX3 599 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 TMEM191CA6NGB0 347 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 PJA2O43164 708 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 GPD1P21695 349 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 NOS2P35228 1153 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 SMAD4Q13485 552 aaKnown RBP28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 BEND5Q7L4P6 421 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 ARCQ7LC44 396 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 MIB1Q86YT6 1006 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 RHOT2Q8IXI1 618 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 DQX1Q8TE96 717 aaKnown RBP28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 SUSD6Q92537 303 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 TRIM44Q96DX7 344 aaPredicted RBP28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 BTBD6Q96KE9 485 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 CDK5RAP1Q96SZ6 601 aaKnown RBP28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 SLC46A2Q9BY10 475 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 RNF38Q9H0F5 515 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 PRDM6Q9NQX0 595 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 RASAL2Q9UJF2 1139 aa28.47■■■□□ 2.15
CHMP4B-201ENST00000217402 CKMP06732 381 aa28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 SDC4P31431 198 aa28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 NOP2P46087 812 aaKnown RBP28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 SULT1E1P49888 294 aa28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 OGDHQ02218 1023 aa28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 TADA2BQ86TJ2 420 aa28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 NPAS3Q8IXF0 933 aa28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 NECTIN4Q96NY8 510 aa28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 DDX23Q9BUQ8 820 aaKnown RBP28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 TASP1Q9H6P5 420 aa28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 OLA1Q9NTK5 396 aaKnown RBP28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 SFMBT1Q9UHJ3 866 aa28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 STAP1Q9ULZ2 295 aa28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 ANAPC1Q9H1A4 1944 aa28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 PRUNE2Q8WUY3 3088 aa28.46■■■□□ 2.15
CHMP4B-201ENST00000217402 TRAV19A0A0A6YYK7 116 aa28.45■■■□□ 2.14
CHMP4B-201ENST00000217402 HDCP19113 662 aa28.45■■■□□ 2.14
CHMP4B-201ENST00000217402 TFE3P19532 575 aaPredicted RBP28.45■■■□□ 2.14
CHMP4B-201ENST00000217402 DDX6P26196 483 aaKnown RBP eCLIP28.45■■■□□ 2.143e-6■■■□□ 19
CHMP4B-201ENST00000217402 ATP5C1P36542 298 aaKnown RBP28.45■■■□□ 2.14
CHMP4B-201ENST00000217402 POTEHQ6S545 545 aa28.45■■■□□ 2.14
CHMP4B-201ENST00000217402 TAC4Q86UU9 113 aa28.45■■■□□ 2.14
CHMP4B-201ENST00000217402 FGF13Q92913 245 aa28.45■■■□□ 2.14
CHMP4B-201ENST00000217402 ZSWIM3Q96MP5 696 aa28.45■■■□□ 2.14
CHMP4B-201ENST00000217402 FAM204AQ9H8W3 233 aa28.45■■■□□ 2.14
CHMP4B-201ENST00000217402 SALL4Q9UJQ4 1053 aa28.45■■■□□ 2.14
CHMP4B-201ENST00000217402 SYNJ2BP-COX16A0A087WUM0 186 aa28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 MSI1O43347 362 aaKnown RBP28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 MBTPS2O43462 519 aa28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 ATP11AP98196 1134 aa28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 CDO1Q16878 200 aa28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 C15orf59Q2T9L4 293 aaPredicted RBP28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 CCDC14Q49A88 953 aa28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 TBCBQ99426 244 aa28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 ADAM33Q9BZ11 813 aa28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 SMG9Q9H0W8 520 aaKnown RBP28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 SMOC2Q9H3U7 446 aa28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 LZTFL1Q9NQ48 299 aa28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 MARCH2Q9P0N8 246 aa28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 COX16Q9P0S2 106 aa28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 DNMT3LQ9UJW3 386 aa28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 DENND4CQ5VZ89 1909 aa28.44■■■□□ 2.14
CHMP4B-201ENST00000217402 MACROD2A1Z1Q3 448 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 BUB1O43683 1085 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 MBL2P11226 248 aaPredicted RBP28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 PSMA2P25787 234 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 ZNF143P52747 638 aaPredicted RBP28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 ZNF252P-AS1Q0IIN9 211 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 SLC25A52Q3SY17 297 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 MSANTD2Q6P1R3 559 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 ZNF276Q8N554 614 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 SMPD4Q9NXE4 827 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 A0A0A6YYK5 440 aaPredicted RBP28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 M0QYT0 321 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 OLFM2O95897 454 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 TRUB2O95900 331 aaKnown RBP28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 SP100P23497 879 aaPredicted RBP28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 AVPR1AP37288 418 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 NAP1L1P55209 391 aaKnown RBP28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 TFF2Q03403 129 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 OTUD1Q5VV17 481 aaPredicted RBP28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 CMTM8Q8IZV2 173 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 NPY6RQ99463 290 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 TSGA10Q9BZW7 698 aa28.43■■■□□ 2.14
CHMP4B-201ENST00000217402 TMEM110-MUSTN1A8MSY1 372 aa28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 DPYSL4O14531 572 aa28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 CCP110O43303 1012 aa28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 GBP2P32456 591 aaPredicted RBP28.42■■■□□ 2.14
CHMP4B-201ENST00000217402 ARHGAP25P42331 645 aa28.42■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms