RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 DUX3Q96PT4 197 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 PYGO2Q9BRQ0 406 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 DCTN5Q9BTE1 182 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 TM2D2Q9BX73 214 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 C1QTNF4Q9BXJ3 329 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 IFT22Q9H7X7 185 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 PAPOLBQ9NRJ5 636 aaKnown RBP0.72□□□□□ -2.29
VPS35-212ENST00000640313 SNX15Q9NRS6 342 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 SLC7A10Q9NS82 523 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 IGSF9Q9P2J2 1179 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 PLEKHB1Q9UF11 243 aaPredicted RBP0.72□□□□□ -2.29
VPS35-212ENST00000640313 ANAPC4Q9UJX5 808 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 AGO2Q9UKV8 859 aaKnown RBP0.72□□□□□ -2.29
VPS35-212ENST00000640313 IPPQ9Y573 584 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 CD2APQ9Y5K6 639 aa0.72□□□□□ -2.29
VPS35-212ENST00000640313 LOC102724159A0A0B4J2E5 919 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 OR6C75A6NL08 312 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 H0YGN5 161 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 M0QYG6 137 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 ZBTB11O95625 1053 aaPredicted RBP0.71□□□□□ -2.3
VPS35-212ENST00000640313 GLUD1P00367 558 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 IFNA2P01563 188 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 APOHP02749 345 aaPredicted RBP0.71□□□□□ -2.3
VPS35-212ENST00000640313 GNAI2P04899 355 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 RPLP2P05387 115 aaKnown RBP0.71□□□□□ -2.3
VPS35-212ENST00000640313 SNRNP70P08621 437 aaKnown RBP0.71□□□□□ -2.3
VPS35-212ENST00000640313 ZNF883P0CG24 379 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 RPS6KB1P23443 525 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 EDNRBP24530 442 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 ADORA2AP29274 412 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 LRPAP1P30533 357 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 HOXA7P31268 230 aaPredicted RBP0.71□□□□□ -2.3
VPS35-212ENST00000640313 VIPR2P41587 438 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 PHKA1P46020 1223 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 ID4P47928 161 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 PIK3CGP48736 1102 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 GLUD2P49448 558 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 PDLIM4P50479 330 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 HK3P52790 923 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 MYO1EQ12965 1108 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 IL10RAQ13651 578 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 PWP2Q15269 919 aaKnown RBP0.71□□□□□ -2.3
VPS35-212ENST00000640313 NFE2L2Q16236 605 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 C21orf62-AS1Q17RA5 79 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 KIF19Q2TAC6 998 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 AMOTQ4VCS5 1084 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 PIK3CD-AS1Q5SR53 167 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 CC2D1BQ5T0F9 858 aaKnown RBP0.71□□□□□ -2.3
VPS35-212ENST00000640313 EGFLAMQ63HQ2 1017 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 CYB5RLQ6IPT4 315 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 SUSD1Q6UWL2 747 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 C16orf86Q6ZW13 317 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 SKAP1Q86WV1 359 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 DCUN1D3Q8IWE4 304 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 NIM1KQ8IY84 436 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 C12orf76Q8N812 135 aaPredicted RBP0.71□□□□□ -2.3
VPS35-212ENST00000640313 USP7Q93009 1102 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 EDC3Q96F86 508 aaKnown RBP0.71□□□□□ -2.3
VPS35-212ENST00000640313 DRC1Q96MC2 740 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 HS6ST2Q96MM7 605 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 PGLYRP2Q96PD5 576 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 SLC2A13Q96QE2 648 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 PKP4Q99569 1192 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 TTC1Q99614 292 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 VRK1Q99986 396 aaPredicted RBP0.71□□□□□ -2.3
VPS35-212ENST00000640313 FAM126AQ9BYI3 521 aaPredicted RBP0.71□□□□□ -2.3
VPS35-212ENST00000640313 DCLK3Q9C098 648 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 TTYH3Q9C0H2 523 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 ABHD16BQ9H3Z7 469 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 RETREG1Q9H6L5 497 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 ZSWIM4Q9H7M6 989 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 AGO4Q9HCK5 861 aaKnown RBP0.71□□□□□ -2.3
VPS35-212ENST00000640313 MLXIPLQ9NP71 852 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 THSD1Q9NS62 852 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 ST6GALNAC1Q9NSC7 600 aaPredicted RBP0.71□□□□□ -2.3
VPS35-212ENST00000640313 SEMA5BQ9P283 1151 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 MGAT4CQ9UBM8 478 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 SHOC2Q9UQ13 582 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 GAB2Q9UQC2 676 aa0.71□□□□□ -2.3
VPS35-212ENST00000640313 MRPL42Q9Y6G3 142 aaKnown RBP0.71□□□□□ -2.3
VPS35-212ENST00000640313 SPATA31A1Q5TZJ5 1347 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 ZNF335Q9H4Z2 1342 aaPredicted RBP0.7□□□□□ -2.3
VPS35-212ENST00000640313 COL4A4P53420 1690 aaPredicted RBP0.7□□□□□ -2.3
VPS35-212ENST00000640313 IGKV3D-15A0A087WSY6 115 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 KIR2DS5A0A0G2JLQ3 304 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 SLC22A23A1A5C7 686 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 hCG_1984214I3L0E3 225 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 KIR2DS3K7RE56 304 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 RRHO14718 337 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 HTRA2O43464 458 aaPredicted RBP0.7□□□□□ -2.3
VPS35-212ENST00000640313 BUB3O43684 328 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 EXTL3O43909 919 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 TMPRSS11DO60235 418 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 PRKD3O94806 890 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 ARIH2O95376 493 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 VNN1O95497 513 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 VIL1P09327 827 aaKnown RBP0.7□□□□□ -2.3
VPS35-212ENST00000640313 CFC1BP0CG36 223 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 CFC1P0CG37 223 aa0.7□□□□□ -2.3
VPS35-212ENST00000640313 CYP2C9P11712 490 aa0.7□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms