RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 ATP2C2O75185 946 aa17.36■□□□□ 0.37
CLN3-264ENST00000637985 MBL2P11226 248 aaPredicted RBP17.36■□□□□ 0.37
CLN3-264ENST00000637985 POLR2BP30876 1174 aaKnown RBP17.36■□□□□ 0.37
CLN3-264ENST00000637985 GRIK1P39086 918 aa17.36■□□□□ 0.37
CLN3-264ENST00000637985 NASPP49321 788 aaPredicted RBP17.36■□□□□ 0.37
CLN3-264ENST00000637985 NOP14P78316 857 aaKnown RBP17.36■□□□□ 0.37
CLN3-264ENST00000637985 MYO1EQ12965 1108 aa17.36■□□□□ 0.37
CLN3-264ENST00000637985 SLFN12LQ6IEE8 588 aa17.36■□□□□ 0.37
CLN3-264ENST00000637985 CRELD2Q6UXH1 353 aaPredicted RBP17.36■□□□□ 0.37
CLN3-264ENST00000637985 DYMQ7RTS9 669 aa17.36■□□□□ 0.37
CLN3-264ENST00000637985 ZNF720Q7Z2F6 126 aa17.36■□□□□ 0.37
CLN3-264ENST00000637985 TOP6BLQ8N6T0 577 aa17.36■□□□□ 0.37
CLN3-264ENST00000637985 C1orf216Q8TAB5 229 aa17.36■□□□□ 0.37
CLN3-264ENST00000637985 HVCN1Q96D96 273 aa17.36■□□□□ 0.37
CLN3-264ENST00000637985 DUSP9Q99956 384 aaKnown RBP17.36■□□□□ 0.37
CLN3-264ENST00000637985 GPR174Q9BXC1 333 aa17.36■□□□□ 0.37
CLN3-264ENST00000637985 MAGEC2Q9UBF1 373 aaPredicted RBP17.36■□□□□ 0.37
CLN3-264ENST00000637985 AGO2Q9UKV8 859 aaKnown RBP17.36■□□□□ 0.37
CLN3-264ENST00000637985 AGAP1Q9UPQ3 857 aa17.36■□□□□ 0.37
CLN3-264ENST00000637985 STYXL1Q9Y6J8 313 aa17.36■□□□□ 0.37
CLN3-264ENST00000637985 METTL12A8MUP2 240 aa17.35■□□□□ 0.37
CLN3-264ENST00000637985 TISP43B9A030 160 aa17.35■□□□□ 0.37
CLN3-264ENST00000637985 ABL1P00519 1130 aa17.35■□□□□ 0.37
CLN3-264ENST00000637985 GAP43P17677 238 aa17.35■□□□□ 0.37
CLN3-264ENST00000637985 BDNFP23560 247 aa17.35■□□□□ 0.37
CLN3-264ENST00000637985 DCAF12L1Q5VU92 463 aa17.35■□□□□ 0.37
CLN3-264ENST00000637985 SCARA3Q6AZY7 606 aa17.35■□□□□ 0.37
CLN3-264ENST00000637985 KIAA1324Q6UXG2 1013 aaKnown RBP17.35■□□□□ 0.37
CLN3-264ENST00000637985 TMEM25Q86YD3 366 aa17.35■□□□□ 0.37
CLN3-264ENST00000637985 ADGRF2Q8IZF7 708 aa17.35■□□□□ 0.37
CLN3-264ENST00000637985 CXorf38Q8TB03 319 aa17.35■□□□□ 0.37
CLN3-264ENST00000637985 MYLPFQ96A32 169 aa17.35■□□□□ 0.37
CLN3-264ENST00000637985 ZFRQ96KR1 1074 aaKnown RBP17.35■□□□□ 0.37
CLN3-264ENST00000637985 ITM2CQ9NQX7 267 aa17.35■□□□□ 0.37
CLN3-264ENST00000637985 SPHK2Q9NRA0 654 aa17.35■□□□□ 0.37
CLN3-264ENST00000637985 USP36Q9P275 1121 aaKnown RBP17.35■□□□□ 0.37
CLN3-264ENST00000637985 GFRA2O00451 464 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 IL18RAPO95256 599 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 ITGB3P05106 788 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 STAT6P42226 847 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 SEMG2Q02383 582 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 TAF10Q12962 218 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 STK38Q15208 465 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 SOWAHAQ2M3V2 549 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 ANO4Q32M45 955 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 CCDC157Q569K6 752 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 GRAMD4Q6IC98 578 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 SFR1Q86XK3 245 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 LRRC52Q8N7C0 313 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 C1orf127Q8N9H9 656 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 LINC00301Q8NCQ3 95 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 DNAJC19Q96DA6 116 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 ZNF396Q96N95 335 aaPredicted RBP17.34■□□□□ 0.37
CLN3-264ENST00000637985 CRTAC1Q9NQ79 661 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 GMIPQ9P107 970 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 SNX9Q9Y5X1 595 aa17.34■□□□□ 0.37
CLN3-264ENST00000637985 A0A1B0GVT2 93 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 KCNJ18B7U540 433 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 PRRT4C9JH25 899 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 PPP6R2O75170 966 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 PPP1R37O75864 691 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 LMO2P25791 158 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 ANXA13P27216 316 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 GRK6P43250 576 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 WNT7BP56706 349 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 POSTNQ15063 836 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 C6orf118Q5T5N4 469 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 HSCBQ8IWL3 235 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 BBS7Q8IWZ6 715 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 SNIP1Q8TAD8 396 aaKnown RBP17.33■□□□□ 0.36
CLN3-264ENST00000637985 SYT15Q9BQS2 421 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 STRA6Q9BX79 667 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 MRPL44Q9H9J2 332 aaKnown RBP17.33■□□□□ 0.36
CLN3-264ENST00000637985 EIF2B4Q9UI10 523 aaKnown RBP17.33■□□□□ 0.36
CLN3-264ENST00000637985 EXOC7Q9UPT5 735 aa17.33■□□□□ 0.36
CLN3-264ENST00000637985 WASH3PC4AMC7 463 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 ERVH48-1M5A8F1 160 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 TRIM66O15016 1216 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 SPTLC2O15270 562 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 CSNK1EP49674 416 aaKnown RBP17.32■□□□□ 0.36
CLN3-264ENST00000637985 PSMC1P62191 440 aaKnown RBP17.32■□□□□ 0.36
CLN3-264ENST00000637985 TFAMQ00059 246 aaKnown RBP17.32■□□□□ 0.36
CLN3-264ENST00000637985 KCNC4Q03721 635 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 MAPRE1Q15691 268 aaKnown RBP17.32■□□□□ 0.36
CLN3-264ENST00000637985 KIF19Q2TAC6 998 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 LIMS2Q7Z4I7 341 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 ENGASEQ8NFI3 743 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 BAP1Q92560 729 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 C8orf48Q96LL4 319 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 SLITRK1Q96PX8 696 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 OLFML3Q9NRN5 406 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 DNAJC17Q9NVM6 304 aaKnown RBP17.32■□□□□ 0.36
CLN3-264ENST00000637985 DNMT3LQ9UJW3 386 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 CDH9Q9ULB4 789 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 SH3BP1Q9Y3L3 701 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 PCDHB13Q9Y5F0 798 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 TMEM131Q92545 1883 aa17.32■□□□□ 0.36
CLN3-264ENST00000637985 FRMD3A2A2Y4 597 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 F8VP50 259 aa17.31■□□□□ 0.36
CLN3-264ENST00000637985 COCHO43405 550 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms