RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 CLCN1P35523 988 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 VCPP55072 806 aaKnown RBP19.19■□□□□ 0.66
CLN3-259ENST00000637551 ADIGQ0VDE8 80 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 IFRD2Q12894 506 aaPredicted RBP19.19■□□□□ 0.66
CLN3-259ENST00000637551 RAPGEF1Q13905 1077 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 GRM2Q14416 872 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 ITPRIPL2Q3MIP1 535 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 ASTLQ6HA08 431 aaPredicted RBP19.19■□□□□ 0.66
CLN3-259ENST00000637551 ZNF852Q6ZMS4 543 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 TMEM110Q86TL2 294 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 EDEM3Q9BZQ6 932 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 MIS12Q9H081 205 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 RNF38Q9H0F5 515 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 ABCC13Q9NSE7 274 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 CHORDC1Q9UHD1 332 aaPredicted RBP19.19■□□□□ 0.66
CLN3-259ENST00000637551 NAGPAQ9UK23 515 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 CPQQ9Y646 472 aa19.19■□□□□ 0.66
CLN3-259ENST00000637551 KANSL1LA0AUZ9 987 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 LEFTY2O00292 366 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 NCAM2O15394 837 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 NFATC1O95644 943 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 GLI1P08151 1106 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 MBL2P11226 248 aaPredicted RBP19.18■□□□□ 0.66
CLN3-259ENST00000637551 KRT9P35527 623 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 DAOAP59103 153 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 YWHAGP61981 247 aaKnown RBP eCLIP19.18■□□□□ 0.66
CLN3-259ENST00000637551 COG7P83436 770 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 NR1H3Q13133 447 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 FIGNQ5HY92 759 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 PMF1Q6P1K2 205 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 LRSAM1Q6UWE0 723 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 BHLHA9Q7RTU4 235 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 ERMP1Q7Z2K6 904 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 SCD5Q86SK9 330 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 ZDHHC17Q8IUH5 632 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 CPA6Q8N4T0 437 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 GOLGA1Q92805 767 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 CYP2S1Q96SQ9 504 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 ULBP1Q9BZM6 244 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 NACA2Q9H009 215 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 CCSER2Q9H7U1 834 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 TBC1D17Q9HA65 648 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 FAM207AQ9NSI2 230 aaPredicted RBP19.18■□□□□ 0.66
CLN3-259ENST00000637551 ZNF510Q9Y2H8 683 aa19.18■□□□□ 0.66
CLN3-259ENST00000637551 A0A1W2PQH9 124 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 ABL1P00519 1130 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 RARGP13631 454 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 CYP11B1P15538 503 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 AVPR2P30518 371 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 SOX5P35711 763 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 SCNN1AP37088 669 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 USP8P40818 1118 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 STAT1P42224 750 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 RPS9P46781 194 aaKnown RBP19.17■□□□□ 0.66
CLN3-259ENST00000637551 IFNAR2P48551 515 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 KPNA1P52294 538 aaPredicted RBP19.17■□□□□ 0.66
CLN3-259ENST00000637551 POLR2FP61218 127 aaKnown RBP19.17■□□□□ 0.66
CLN3-259ENST00000637551 APBA1Q02410 837 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 NNTQ13423 1086 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 MSANTD2Q6P1R3 559 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 HTR3DQ70Z44 454 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 UBA3Q8TBC4 463 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 EPS8L1Q8TE68 723 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 SPAG5Q96R06 1193 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 IRX2Q9BZI1 471 aaPredicted RBP19.17■□□□□ 0.66
CLN3-259ENST00000637551 ASNSD1Q9NWL6 643 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 AJAP1Q9UKB5 411 aaPredicted RBP19.17■□□□□ 0.66
CLN3-259ENST00000637551 STRIP2Q9ULQ0 834 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 PIAS3Q9Y6X2 628 aa19.17■□□□□ 0.66
CLN3-259ENST00000637551 TULP2O00295 520 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 TPM3P06753 285 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 EIF2DP41214 584 aaKnown RBP19.16■□□□□ 0.66
CLN3-259ENST00000637551 PDCLQ13371 301 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 RUNX3Q13761 415 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 EML3Q32P44 896 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 CWF19L1Q69YN2 538 aaKnown RBP19.16■□□□□ 0.66
CLN3-259ENST00000637551 TRIM72Q6ZMU5 477 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 MAMSTRQ6ZN01 415 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 SLC47A2Q86VL8 602 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 MSANTD4Q8NCY6 345 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 PJA1Q8NG27 643 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 KLF16Q9BXK1 252 aaPredicted RBP19.16■□□□□ 0.66
CLN3-259ENST00000637551 DCLK3Q9C098 648 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 SMG9Q9H0W8 520 aaKnown RBP19.16■□□□□ 0.66
CLN3-259ENST00000637551 NMUR1Q9HB89 426 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 GKN1Q9NS71 199 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 OSER1Q9NX31 292 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 DUS2Q9NX74 493 aaKnown RBP19.16■□□□□ 0.66
CLN3-259ENST00000637551 LSM7Q9UK45 103 aaKnown RBP19.16■□□□□ 0.66
CLN3-259ENST00000637551 CA14Q9ULX7 337 aa19.16■□□□□ 0.66
CLN3-259ENST00000637551 HBS1LQ9Y450 684 aaKnown RBP19.16■□□□□ 0.66
CLN3-259ENST00000637551 LATS1O95835 1130 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 SERPINC1P01008 464 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 CTHP32929 405 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 ZNF445P59923 1031 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 ZXDBP98169 803 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 NR1I3Q14994 352 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 C10orf120Q5SQS8 335 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 BTBD8Q5XKL5 378 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 PPP1R2P3Q6NXS1 205 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms