RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 TMEM51Q9NW97 253 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 CHD7Q9P2D1 2997 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 C2orf71A6NGG8 1288 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 MYO1CO00159 1063 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 DPYSL4O14531 572 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 GRM6O15303 877 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 HSF2BPO75031 334 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 RNF40O75150 1001 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 SEC24AO95486 1093 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 FTCDO95954 541 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 COMTP21964 271 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 ZNF143P52747 638 aaPredicted RBP14.8□□□□□ -0.04
CLN3-242ENST00000635958 YWHAZP63104 245 aaKnown RBP14.8□□□□□ -0.04
CLN3-242ENST00000635958 MGAT5BQ3V5L5 792 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 TRNP1Q6NT89 227 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 EMBQ6PCB8 327 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 BEND5Q7L4P6 421 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 PEX26Q7Z412 305 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 SCAMP5Q8TAC9 235 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 CD101Q93033 1021 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 HES6Q96HZ4 224 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 EMILIN2Q9BXX0 1053 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 FAM204AQ9H8W3 233 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 AMFRQ9UKV5 643 aa14.8□□□□□ -0.04
CLN3-242ENST00000635958 RRP15Q9Y3B9 282 aaKnown RBP14.8□□□□□ -0.04
CLN3-242ENST00000635958 ENC1O14682 589 aa14.79□□□□□ -0.04
CLN3-242ENST00000635958 SYF2O95926 243 aaKnown RBP14.79□□□□□ -0.04
CLN3-242ENST00000635958 ADH1AP07327 375 aa14.79□□□□□ -0.04
CLN3-242ENST00000635958 USP17L7P0C7H9 530 aa14.79□□□□□ -0.04
CLN3-242ENST00000635958 FLT3P36888 993 aa14.79□□□□□ -0.04
CLN3-242ENST00000635958 GPR15P49685 360 aa14.79□□□□□ -0.04
CLN3-242ENST00000635958 EMC1Q8N766 993 aa14.79□□□□□ -0.04
CLN3-242ENST00000635958 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.79□□□□□ -0.04
CLN3-242ENST00000635958 RXFP2Q8WXD0 754 aa14.79□□□□□ -0.04
CLN3-242ENST00000635958 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.79□□□□□ -0.045e-8■■■■■ 65.3
CLN3-242ENST00000635958 SLC2A13Q96QE2 648 aa14.79□□□□□ -0.04
CLN3-242ENST00000635958 SEPT5Q99719 369 aaPredicted RBP14.79□□□□□ -0.04
CLN3-242ENST00000635958 CNPY3Q9BT09 278 aa14.79□□□□□ -0.04
CLN3-242ENST00000635958 DDX23Q9BUQ8 820 aaKnown RBP14.79□□□□□ -0.04
CLN3-242ENST00000635958 FBXO44Q9H4M3 255 aa14.79□□□□□ -0.04
CLN3-242ENST00000635958 ENTPD7Q9NQZ7 604 aa14.79□□□□□ -0.04
CLN3-242ENST00000635958 SCML2Q9UQR0 700 aa14.79□□□□□ -0.04
CLN3-242ENST00000635958 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.78□□□□□ -0.04
CLN3-242ENST00000635958 YJEFN3A6XGL0 299 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 E7ENQ6 273 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 SHOX2O60902 331 aaPredicted RBP14.78□□□□□ -0.04
CLN3-242ENST00000635958 RTN3O95197 1032 aaPredicted RBP14.78□□□□□ -0.04
CLN3-242ENST00000635958 PDGFRAP16234 1089 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 ATF6P18850 670 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 GPD1P21695 349 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 PTPN9P43378 593 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 RNASE9P60153 205 aaKnown RBP14.78□□□□□ -0.04
CLN3-242ENST00000635958 GPM6BQ13491 265 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 DENND5BQ6ZUT9 1274 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 FAM76AQ8TAV0 307 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 AENQ8WTP8 325 aaKnown RBP14.78□□□□□ -0.04
CLN3-242ENST00000635958 NDRG1Q92597 394 aaKnown RBP14.78□□□□□ -0.04
CLN3-242ENST00000635958 NT5C3BQ969T7 300 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 NKX2-4Q9H2Z4 354 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 MTUS1Q9ULD2 1270 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 TMEM110-MUSTN1A8MSY1 372 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 HIDE1A8MVS5 230 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 MIF4GDA9UHW6 222 aaKnown RBP14.78□□□□□ -0.04
CLN3-242ENST00000635958 DAB1O75553 588 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 GRAP2O75791 330 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 SOAT2O75908 522 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 FYNP06241 537 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 PSMA2P25787 234 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 CTNNA2P26232 953 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 MATKP42679 507 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 MAGEA9P43362 315 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 RPS6KA1Q15418 735 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 CCDC14Q49A88 953 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 SDHAF4Q5VUM1 108 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 CENPIQ92674 756 aaPredicted RBP14.78□□□□□ -0.04
CLN3-242ENST00000635958 TTLL2Q9BWV7 592 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 LMAN2LQ9H0V9 348 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 CYP4F11Q9HBI6 524 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 POPDC2Q9HBU9 364 aa14.78□□□□□ -0.04
CLN3-242ENST00000635958 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.78□□□□□ -0.04
CLN3-242ENST00000635958 COL4A4P53420 1690 aaPredicted RBP14.77□□□□□ -0.04
CLN3-242ENST00000635958 LAMA3Q16787 3333 aa14.77□□□□□ -0.04
CLN3-242ENST00000635958 GREB1Q4ZG55 1949 aa14.77□□□□□ -0.04
CLN3-242ENST00000635958 GOLGA6BA6NDN3 693 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 TGM5O43548 720 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 LTFP02788 710 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 ELF1P32519 619 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 NOS2P35228 1153 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 GYS2P54840 703 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 SMAD3P84022 425 aaKnown RBP14.77□□□□□ -0.05
CLN3-242ENST00000635958 HFE2Q6ZVN8 426 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 RTL10Q7L3V2 364 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 BNIPLQ7Z465 357 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 MON1AQ86VX9 555 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 CPNE8Q86YQ8 564 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 CREG2Q8IUH2 290 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 DEFB106AQ8N104 65 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 ARFGAP1Q8N6T3 406 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 CAVIN3Q969G5 261 aa14.77□□□□□ -0.05
CLN3-242ENST00000635958 NCAPGQ9BPX3 1015 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms