RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 APOL1O14791 398 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 TCEA3O75764 348 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 ATP5DP30049 168 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 ELK3P41970 407 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 GTF2A1P52655 376 aaPredicted RBP11.06□□□□□ -0.64
CUX1-221ENST00000622516 WDR4P57081 412 aaKnown RBP11.06□□□□□ -0.64
CUX1-221ENST00000622516 BST2Q10589 180 aaKnown RBP11.06□□□□□ -0.64
CUX1-221ENST00000622516 CRHR2Q13324 411 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 SMAD1Q15797 465 aaKnown RBP11.06□□□□□ -0.64
CUX1-221ENST00000622516 BOLA3Q53S33 107 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 DCAF6Q58WW2 860 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 KIAA0319Q5VV43 1072 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 C17orf99Q6UX52 265 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 MAP7D3Q8IWC1 876 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 AGGF1Q8N302 714 aaeCLIP11.06□□□□□ -0.642e-7■■■■■ 57.8
CUX1-221ENST00000622516 CCDC197Q8NCU1 140 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 CEP41Q9BYV8 373 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 TRABDQ9H4I3 376 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 PIH1D1Q9NWS0 290 aaKnown RBP11.06□□□□□ -0.64
CUX1-221ENST00000622516 MIOSQ9NXC5 875 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 RABGEF1Q9UJ41 708 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 ST3GAL5Q9UNP4 418 aa11.06□□□□□ -0.64
CUX1-221ENST00000622516 SRRM3A6NNA2 597 aaPredicted RBP11.05□□□□□ -0.64
CUX1-221ENST00000622516 CD4P01730 458 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 APRTP07741 180 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 GOT1P17174 413 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 AMPD1P23109 780 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 CYP2F1P24903 491 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 FOXN2P32314 431 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 RPA3P35244 121 aaPredicted RBP11.05□□□□□ -0.64
CUX1-221ENST00000622516 CRYBB1P53674 252 aaPredicted RBP11.05□□□□□ -0.64
CUX1-221ENST00000622516 STILQ15468 1287 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 TRABD2AQ86V40 505 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 UNC93AQ86WB7 457 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 FUKQ8N0W3 1084 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 DEFB106AQ8N104 65 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 PDIK1LQ8N165 341 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 TTC39CQ8N584 583 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 B3GALNT2Q8NCR0 500 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 TGS1Q96RS0 853 aaKnown RBP11.05□□□□□ -0.64
CUX1-221ENST00000622516 KCNK16Q96T55 309 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 NKIRAS1Q9NYS0 192 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 SAMD15Q9P1V8 674 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 LGALS13Q9UHV8 139 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 CDY2AQ9Y6F7 541 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 WDR91A4D1P6 747 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 CASTOR2A6NHX0 329 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 ZBED1O96006 694 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 KRT4P19013 534 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 L1CAMP32004 1257 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 CLCNKBP51801 687 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 BCAT1P54687 386 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 CDC42EP1Q00587 391 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 NME3Q13232 169 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 TFDP2Q14188 446 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 MDH1BQ5I0G3 518 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 HFE2Q6ZVN8 426 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 PIGWQ7Z7B1 504 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 HASPINQ8TF76 798 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 PPM1EQ8WY54 764 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 TTC25Q96NG3 672 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 MED10Q9BTT4 135 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 GRID1Q9ULK0 1009 aa11.05□□□□□ -0.64
CUX1-221ENST00000622516 FAM155BO75949 473 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 ABHD2P08910 425 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 RGS2P41220 211 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 MAP3K7CLP57077 242 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 YWHAGP61981 247 aaKnown RBP eCLIP11.04□□□□□ -0.64
CUX1-221ENST00000622516 SATB1Q01826 763 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 FAM133BQ5BKY9 247 aaKnown RBP11.04□□□□□ -0.64
CUX1-221ENST00000622516 SYPL2Q5VXT5 272 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 ARHGAP17Q68EM7 881 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 GDF6Q6KF10 455 aaPredicted RBP11.04□□□□□ -0.64
CUX1-221ENST00000622516 PCGF5Q86SE9 256 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 IFNL1Q8IU54 200 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 CRYBG2Q8N1P7 616 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 GSTCDQ8NEC7 633 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 USP6NLQ92738 828 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 CFAP36Q96G28 342 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 RHOBTB2Q9BYZ6 727 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 FOXP3Q9BZS1 431 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 NRDE2Q9H7Z3 1164 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 ALG13Q9NP73 1137 aaKnown RBP11.04□□□□□ -0.64
CUX1-221ENST00000622516 AP4E1Q9UPM8 1137 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 MRPL42Q9Y6G3 142 aaKnown RBP11.04□□□□□ -0.64
CUX1-221ENST00000622516 KBTBD13C9JR72 458 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 CA4P22748 312 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 GRIA1P42261 906 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 DNAJC3Q13217 504 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 PAQR9Q6ZVX9 377 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 TP53INP2Q8IXH6 220 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 C3orf58Q8NDZ4 430 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 ZNF560Q96MR9 790 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 KCTD15Q96SI1 283 aaPredicted RBP11.04□□□□□ -0.64
CUX1-221ENST00000622516 PAFAH2Q99487 392 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 SLCO1B3Q9NPD5 702 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 ABCF3Q9NUQ8 709 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 MTMR10Q9NXD2 777 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 GABRQQ9UN88 632 aa11.04□□□□□ -0.64
CUX1-221ENST00000622516 ZNF638Q14966 1978 aaKnown RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms