RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ZNF132P52740 706 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 DMTNQ08495 405 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 CCNG2Q16589 344 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 NSMCE1Q8WV22 266 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 EXOC4Q96A65 974 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 TRAIPQ9BWF2 469 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 NEU2Q9Y3R4 380 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 CCDC78A2IDD5 438 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 HOXD8P13378 290 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-213ENST00000620219 IGFBP6P24592 240 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-213ENST00000620219 ERMARDQ5T6L9 678 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 FBXO32Q969P5 355 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 KLC2Q9H0B6 622 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 TRPC7Q9HCX4 862 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 PIRO00625 290 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 LONRF1Q17RB8 773 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 CPLX4Q7Z7G2 160 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 PXYLP1Q8TE99 480 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 HSFY1Q96LI6 401 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 EPAS1Q99814 870 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 HERPUD2Q9BSE4 406 aa16.36■□□□□ 0.21
CPSF1-213ENST00000620219 SOAT2O75908 522 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 TRUB2O95900 331 aaKnown RBP16.35■□□□□ 0.21
CPSF1-213ENST00000620219 ACRP10323 421 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 IRF1P10914 325 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 IRF5Q13568 498 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 ZDHHC14Q8IZN3 488 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 GNRH1P01148 92 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 CYP3A5P20815 502 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 CEP128Q6ZU80 1094 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 FUKQ8N0W3 1084 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 TMEM174Q8WUU8 243 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 CAVIN3Q969G5 261 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 POPDC2Q9HBU9 364 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 DNAJB4Q9UDY4 337 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 CPP00450 1065 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 ITIH2P19823 946 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 SARNPP82979 210 aaKnown RBP16.35■□□□□ 0.21
CPSF1-213ENST00000620219 ADCY2Q08462 1091 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 NFE2Q16621 373 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-213ENST00000620219 TMC3Q7Z5M5 1100 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 CELF6Q96J87 481 aaKnown RBP16.35■□□□□ 0.21
CPSF1-213ENST00000620219 TBC1D13Q9NVG8 400 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 NKIRAS1Q9NYS0 192 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 AGPSO00116 658 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 RPL17P18621 184 aaKnown RBP16.35■□□□□ 0.21
CPSF1-213ENST00000620219 IL1R2P27930 398 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 CTCFP49711 727 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-213ENST00000620219 ZNF572Q7Z3I7 529 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-213ENST00000620219 DDX23Q9BUQ8 820 aaKnown RBP16.35■□□□□ 0.21
CPSF1-213ENST00000620219 TMEM59LQ9UK28 342 aa16.35■□□□□ 0.21
CPSF1-213ENST00000620219 PIAS1O75925 651 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 SLC4A1P02730 911 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 SAT1P21673 171 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 TKTP29401 623 aaKnown RBP16.34■□□□□ 0.21
CPSF1-213ENST00000620219 ARL4CP56559 192 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 TRIM60Q495X7 471 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 RNF187Q5TA31 235 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-213ENST00000620219 SPON2Q9BUD6 331 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 TPX2Q9ULW0 747 aaKnown RBP16.34■□□□□ 0.21
CPSF1-213ENST00000620219 FSCN2O14926 492 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 APOEP02649 317 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 CCT5P48643 541 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 SESN2P58004 480 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-213ENST00000620219 MRPS5P82675 430 aaKnown RBP16.34■□□□□ 0.21
CPSF1-213ENST00000620219 HIF1AQ16665 826 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 CCDC117Q8IWD4 279 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-213ENST00000620219 VPS52Q8N1B4 723 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 PAWRQ96IZ0 340 aaKnown RBP16.34■□□□□ 0.21
CPSF1-213ENST00000620219 CYP4F11Q9HBI6 524 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 PIH1D1Q9NWS0 290 aaKnown RBP16.34■□□□□ 0.21
CPSF1-213ENST00000620219 FNDC3AQ9Y2H6 1198 aaKnown RBP16.34■□□□□ 0.21
CPSF1-213ENST00000620219 PCDHB5Q9Y5E4 795 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 XPO1O14980 1071 aaKnown RBP16.34■□□□□ 0.21
CPSF1-213ENST00000620219 HOXA2O43364 376 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 MTA2O94776 668 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 PHBP35232 272 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 POU5F1Q01860 360 aaKnown RBP16.34■□□□□ 0.21
CPSF1-213ENST00000620219 RAB6CQ53S08 254 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 SCAMP5Q8TAC9 235 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 CCDC110Q8TBZ0 833 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 EPS8L3Q8TE67 593 aaKnown RBP16.34■□□□□ 0.21
CPSF1-213ENST00000620219 RSPH1Q8WYR4 309 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 ATP6V1G3Q96LB4 118 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 RAB6CQ9H0N0 254 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 PTPRFP10586 1907 aa16.34■□□□□ 0.21
CPSF1-213ENST00000620219 SHBGP04278 402 aa16.33■□□□□ 0.21
CPSF1-213ENST00000620219 ITGB1P05556 798 aa16.33■□□□□ 0.21
CPSF1-213ENST00000620219 VCPP55072 806 aaKnown RBP16.33■□□□□ 0.21
CPSF1-213ENST00000620219 INCA1Q0VD86 236 aa16.33■□□□□ 0.21
CPSF1-213ENST00000620219 TTMPQ5BVD1 217 aa16.33■□□□□ 0.21
CPSF1-213ENST00000620219 BZW1Q7L1Q6 419 aaKnown RBP16.33■□□□□ 0.21
CPSF1-213ENST00000620219 TMCO2Q7Z6W1 182 aaPredicted RBP16.33■□□□□ 0.21
CPSF1-213ENST00000620219 XPO7Q9UIA9 1087 aaKnown RBP16.33■□□□□ 0.21
CPSF1-213ENST00000620219 hCG_1818297A0A087WSY0 165 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 HADHBP55084 474 aaKnown RBP16.33■□□□□ 0.2
CPSF1-213ENST00000620219 LRRC31Q6UY01 552 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 MYCBPAPQ8TBZ2 947 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 SAMD15Q9P1V8 674 aa16.33■□□□□ 0.2
CPSF1-213ENST00000620219 CHMP2BQ9UQN3 213 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms