RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 TFAP2BQ92481 460 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 ZFRQ96KR1 1074 aaKnown RBP16.83■□□□□ 0.28
BRCA1-228ENST00000618469 ECT2Q9H8V3 914 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 NMUR1Q9HB89 426 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 UBE2TQ9NPD8 197 aaPredicted RBP16.83■□□□□ 0.28
BRCA1-228ENST00000618469 PRMT8Q9NR22 394 aaPredicted RBP16.83■□□□□ 0.28
BRCA1-228ENST00000618469 NAGPAQ9UK23 515 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 NFE2L3Q9Y4A8 694 aa16.83■□□□□ 0.28
BRCA1-228ENST00000618469 KCNJ18B7U540 433 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 TULP2O00295 520 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 XPO1O14980 1071 aaKnown RBP16.82■□□□□ 0.28
BRCA1-228ENST00000618469 NFATC1O95644 943 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 IRF1P10914 325 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 SLC9A1P19634 815 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 ZNF132P52740 706 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 APBA1Q02410 837 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 LRRC32Q14392 662 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 KCNJ12Q14500 433 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 STX1AQ16623 288 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 EXOC3L4Q17RC7 722 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 CT47A1Q5JQC4 288 aaPredicted RBP16.82■□□□□ 0.28
BRCA1-228ENST00000618469 GJB7Q6PEY0 223 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 SASS6Q6UVJ0 657 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 UBA3Q8TBC4 463 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 CHFRQ96EP1 664 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 CHRDQ9H2X0 955 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 LMAN1LQ9HAT1 526 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 CYLDQ9NQC7 956 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 SAMSN1Q9NSI8 373 aaKnown RBP16.82■□□□□ 0.28
BRCA1-228ENST00000618469 OSER1Q9NX31 292 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 APEX2Q9UBZ4 518 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 RAB23Q9ULC3 237 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 KIAA1257Q9ULG3 409 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.82■□□□□ 0.28
BRCA1-228ENST00000618469 USP3Q9Y6I4 520 aa16.82■□□□□ 0.28
BRCA1-228ENST00000618469 GTPBP10A4D1E9 387 aaKnown RBP16.81■□□□□ 0.28
BRCA1-228ENST00000618469 RNF225M0QZC1 329 aaPredicted RBP16.81■□□□□ 0.28
BRCA1-228ENST00000618469 PES1O00541 588 aaKnown RBP16.81■□□□□ 0.28
BRCA1-228ENST00000618469 MDM4O15151 490 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 SETSIPP0DME0 302 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 HOXC13P31276 330 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 TKTL1P51854 596 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 DMWDQ09019 674 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 ADIGQ0VDE8 80 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 C11orf57Q6ZUT1 292 aaPredicted RBP16.81■□□□□ 0.28
BRCA1-228ENST00000618469 ENOSF1Q7L5Y1 443 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 ZSWIM1Q9BR11 485 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 TUBGCP2Q9BSJ2 902 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 ULBP1Q9BZM6 244 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 LINC00597Q9H2U6 94 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 LRRC4Q9HBW1 653 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 RBM12Q9NTZ6 932 aaKnown RBP16.81■□□□□ 0.28
BRCA1-228ENST00000618469 NUDT5Q9UKK9 219 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 SH3BP1Q9Y3L3 701 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 SDK1Q7Z5N4 2213 aa16.81■□□□□ 0.28
BRCA1-228ENST00000618469 USP24Q9UPU5 2620 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 SLC9A3R1O14745 358 aaPredicted RBP16.8■□□□□ 0.28
BRCA1-228ENST00000618469 TBX18O95935 607 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 CHRNB1P11230 501 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 TDGF1P13385 188 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 RARGP13631 454 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 GJA4P35212 333 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 PLA2G4AP47712 749 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 PSEN1P49768 467 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 MFAP3P55082 362 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 AMPD2Q01433 879 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 STILQ15468 1287 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 ARHGAP44Q17R89 818 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 VWA3BQ502W6 1294 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 RAB41Q5JT25 222 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 MIIPQ5JXC2 388 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 C10orf120Q5SQS8 335 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 NAIF1Q69YI7 327 aaPredicted RBP16.8■□□□□ 0.28
BRCA1-228ENST00000618469 LCLAT1Q6UWP7 414 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 Q6ZS52 159 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 SCD5Q86SK9 330 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 SIX6OS1Q8N1H7 587 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 ENOX1Q8TC92 643 aaKnown RBP16.8■□□□□ 0.28
BRCA1-228ENST00000618469 FAM81BQ96LP2 452 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 UBXN6Q9BZV1 441 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 NDST4Q9H3R1 872 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.8■□□□□ 0.28
BRCA1-228ENST00000618469 ANO10Q9NW15 660 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 TMEM63CQ9P1W3 806 aa16.8■□□□□ 0.28
BRCA1-228ENST00000618469 E2F8A0AVK6 867 aa16.79■□□□□ 0.28
BRCA1-228ENST00000618469 SLC30A4O14863 429 aa16.79■□□□□ 0.28
BRCA1-228ENST00000618469 CYP17A1P05093 508 aa16.79■□□□□ 0.28
BRCA1-228ENST00000618469 RALAP11233 206 aa16.79■□□□□ 0.28
BRCA1-228ENST00000618469 EEF1GP26641 437 aaKnown RBP16.79■□□□□ 0.28
BRCA1-228ENST00000618469 PON1P27169 355 aa16.79■□□□□ 0.28
BRCA1-228ENST00000618469 ATP5C1P36542 298 aaKnown RBP16.79■□□□□ 0.28
BRCA1-228ENST00000618469 USP8P40818 1118 aa16.79■□□□□ 0.28
BRCA1-228ENST00000618469 RGS7P49802 495 aa16.79■□□□□ 0.28
BRCA1-228ENST00000618469 SATB1Q01826 763 aa16.79■□□□□ 0.28
BRCA1-228ENST00000618469 GOLGA8FQ08AF8 430 aa16.79■□□□□ 0.28
BRCA1-228ENST00000618469 GOLGA8DPQ0D2H9 430 aa16.79■□□□□ 0.28
BRCA1-228ENST00000618469 NR1H3Q13133 447 aa16.79■□□□□ 0.28
BRCA1-228ENST00000618469 CCINQ13939 588 aa16.79■□□□□ 0.28
BRCA1-228ENST00000618469 PKDCCQ504Y2 493 aa16.79■□□□□ 0.28
BRCA1-228ENST00000618469 TCP11X2Q5H9J9 407 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms