RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 ZNF516Q92618 1163 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 TMEM120AQ9BXJ8 343 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 NXF3Q9H4D5 531 aaKnown RBP9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 PCDH9Q9HC56 1237 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 RPTORQ8N122 1335 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 CFAP73A6NFT4 308 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 PGK1P00558 417 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 TCN1P20061 433 aaPredicted RBP9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 MCL1Q07820 350 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 DPYSL3Q14195 570 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 FSCBQ5H9T9 825 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 GLB1LQ6UWU2 654 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 MTDHQ86UE4 582 aaKnown RBP9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 TINF2Q9BSI4 451 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 TNFSF13BQ9Y275 285 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 STRCQ7RTU9 1775 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 MEI4A8MW99 385 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 PAEPP09466 180 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 EIF4BP23588 611 aaKnown RBP9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 ARL2P36404 184 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 ABCG1P45844 678 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 PLPPR4Q7Z2D5 763 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 TMEM192Q8IY95 271 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 TMEM130Q8N3G9 435 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 RASGEF1CQ8N431 466 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 EFHBQ8N7U6 833 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 VPS39Q96JC1 886 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 ZNF512Q96ME7 567 aaPredicted RBP9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 NDFIP2Q9NV92 336 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 PCYOX1Q9UHG3 505 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 SNCAIPQ9Y6H5 919 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 RPS6KL1Q9Y6S9 549 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 ENDOD1O94919 500 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 ATN1P54259 1190 aaPredicted RBP9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 ZACNQ401N2 412 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 MON1BQ7L1V2 547 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 TMA16Q96EY4 203 aaKnown RBP9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 SYT15Q9BQS2 421 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 DPEP3Q9H4B8 488 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 CATSPERBQ9H7T0 1116 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 MID2Q9UJV3 735 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 KCNH4Q9UQ05 1017 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 LYPLA2O95372 231 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 MMP3P08254 477 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 STIP1P31948 543 aaKnown RBP9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 FDFT1P37268 417 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 ITIH4Q14624 930 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 TFAP2DQ7Z6R9 452 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 ZCCHC9Q8N567 271 aaKnown RBP9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 B3GNT5Q9BYG0 378 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 HEY2Q9UBP5 337 aa9.24□□□□□ -0.93
PDLIM5-222ENST00000615540 NVLO15381 856 aaKnown RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 DHX15O43143 795 aaKnown RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 USP12O75317 370 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 UBOX5O94941 541 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 SCNN1GP51170 649 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 FAAP100Q0VG06 881 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 ZNF410Q86VK4 478 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 PHF13Q86YI8 300 aaPredicted RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 ELMOD1Q8N336 334 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 SCG3Q8WXD2 468 aaKnown RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 TRPV6Q9H1D0 765 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 EPS15L1Q9UBC2 864 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 PRDM4Q9UKN5 801 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 RUVBL2Q9Y230 463 aaKnown RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 ADGRA3Q8IWK6 1321 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 ZC3H4Q9UPT8 1303 aaKnown RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 IRS2Q9Y4H2 1338 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 SIGLEC16A6NMB1 481 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 CD48P09326 243 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 BDNFP23560 247 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 RPL10AP62906 217 aaKnown RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 QPCTQ16769 361 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 ASTE1Q2TB18 679 aaPredicted RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 ZCCHC23Q6ZST2 131 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 ARID3BQ8IVW6 561 aaPredicted RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 GIPC2Q8TF65 315 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 EIF2AQ9BY44 585 aaKnown RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 WWP1Q9H0M0 922 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 ADGRA2Q96PE1 1338 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 NCF1BA6NI72 391 aaPredicted RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 NCF1CA8MVU1 366 aaPredicted RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 KIF3CO14782 793 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 SMIM24O75264 130 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 NCF1P14598 390 aaPredicted RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 FECHP22830 423 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 SERPINB9P50453 376 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 MBTD1Q05BQ5 628 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 ICE2Q659A1 982 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 DEFB128Q7Z7B8 93 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 TCP10LQ8TDR4 215 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 VCPIP1Q96JH7 1222 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 THTPAQ9BU02 230 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 PRKAG2Q9UGJ0 569 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 NOCTQ9UK39 431 aaKnown RBP9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 MAST2Q6P0Q8 1798 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 hCG_1818297A0A087WSY0 165 aa9.23□□□□□ -0.93
PDLIM5-222ENST00000615540 PDAP1Q13442 181 aaKnown RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms