RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 MSLNLQ96KJ4 702 aa15.03■□□□□ -0
UPF1-211ENST00000600868 CALR3Q96L12 384 aaKnown RBP15.03■□□□□ -0
UPF1-211ENST00000600868 S1PR5Q9H228 398 aa15.03■□□□□ -0
UPF1-211ENST00000600868 CTTNBP2NLQ9P2B4 639 aa15.03■□□□□ -0
UPF1-211ENST00000600868 TFR2Q9UP52 801 aa15.03■□□□□ -0
UPF1-211ENST00000600868 TMEM191CA6NGB0 347 aa15.02■□□□□ -0
UPF1-211ENST00000600868 C2CD4BA6NLJ0 364 aa15.02■□□□□ -0
UPF1-211ENST00000600868 ZNF197O14709 1029 aa15.02■□□□□ -0
UPF1-211ENST00000600868 ZSCAN12O43309 604 aa15.02■□□□□ -0
UPF1-211ENST00000600868 KRT86O43790 486 aa15.02■□□□□ -0
UPF1-211ENST00000600868 GRAP2O75791 330 aa15.02■□□□□ -0
UPF1-211ENST00000600868 GJB6O95452 261 aa15.02■□□□□ -0
UPF1-211ENST00000600868 RALAP11233 206 aa15.02■□□□□ -0
UPF1-211ENST00000600868 MYL4P12829 197 aa15.02■□□□□ -0
UPF1-211ENST00000600868 NOS2P35228 1153 aa15.02■□□□□ -0
UPF1-211ENST00000600868 RFC1P35251 1148 aaPredicted RBP15.02■□□□□ -0
UPF1-211ENST00000600868 DEKP35659 375 aaKnown RBP15.02■□□□□ -0
UPF1-211ENST00000600868 MATKP42679 507 aa15.02■□□□□ -0
UPF1-211ENST00000600868 TUBP50607 506 aa15.02■□□□□ -0
UPF1-211ENST00000600868 RNASE9P60153 205 aaKnown RBP15.02■□□□□ -0
UPF1-211ENST00000600868 RPL7AP62424 266 aaKnown RBP15.02■□□□□ -0
UPF1-211ENST00000600868 PRSS36Q5K4E3 855 aa15.02■□□□□ -0
UPF1-211ENST00000600868 PDZD4Q76G19 769 aaPredicted RBP15.02■□□□□ -0
UPF1-211ENST00000600868 JOSD2Q8TAC2 188 aa15.02■□□□□ -0
UPF1-211ENST00000600868 ZNF564Q8TBZ8 553 aaPredicted RBP15.02■□□□□ -0
UPF1-211ENST00000600868 FNIP1Q8TF40 1166 aa15.02■□□□□ -0
UPF1-211ENST00000600868 MCEEQ96PE7 176 aa15.02■□□□□ -0
UPF1-211ENST00000600868 GCNAQ96QF7 691 aa15.02■□□□□ -0
UPF1-211ENST00000600868 CDK5RAP1Q96SZ6 601 aaKnown RBP15.02■□□□□ -0
UPF1-211ENST00000600868 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.02■□□□□ -0
UPF1-211ENST00000600868 OSER1Q9NX31 292 aa15.02■□□□□ -0
UPF1-211ENST00000600868 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.02■□□□□ -0
UPF1-211ENST00000600868 NOTCH4Q99466 2003 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.01□□□□□ -0.01
UPF1-211ENST00000600868 A0A0U1RQJ8 604 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 SOBPA7XYQ1 873 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 CAPN9O14815 690 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 CCP110O43303 1012 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 NCAM1P13591 858 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 RARGP13631 454 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 PFKLP17858 780 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 FLT3P36888 993 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 CCR2P41597 374 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 ARHGAP25P42331 645 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 ATAT1Q5SQI0 421 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 HECTD3Q5T447 861 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 CES5AQ6NT32 575 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 TRNP1Q6NT89 227 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 MSANTD2Q6P1R3 559 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 TADA2BQ86TJ2 420 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 REXO1L1PQ8IX06 675 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 DEFB106AQ8N104 65 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 RNF10Q8N5U6 811 aaKnown RBP15.01□□□□□ -0.01
UPF1-211ENST00000600868 EMC1Q8N766 993 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 SHKBP1Q8TBC3 707 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 RXFP2Q8WXD0 754 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 ATRIPQ8WXE1 791 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 MRPS31Q92665 395 aaKnown RBP15.01□□□□□ -0.01
UPF1-211ENST00000600868 DDX23Q9BUQ8 820 aaKnown RBP15.01□□□□□ -0.01
UPF1-211ENST00000600868 ATXN3LQ9H3M9 355 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 KCND1Q9NSA2 647 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 OLA1Q9NTK5 396 aaKnown RBP15.01□□□□□ -0.01
UPF1-211ENST00000600868 RRN3Q9NYV6 651 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 LCMT1Q9UIC8 334 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 ZMYM5Q9UJ78 669 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 COG5Q9UP83 839 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 NAALADL1Q9UQQ1 740 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 DUSP10Q9Y6W6 482 aa15.01□□□□□ -0.01
UPF1-211ENST00000600868 C2orf16Q68DN1 1984 aa15□□□□□ -0.01
UPF1-211ENST00000600868 DENND4CQ5VZ89 1909 aa15□□□□□ -0.01
UPF1-211ENST00000600868 OBSL1O75147 1896 aa15□□□□□ -0.01
UPF1-211ENST00000600868 A0A1W2PRU2 124 aa15□□□□□ -0.01
UPF1-211ENST00000600868 MYO1FO00160 1098 aa15□□□□□ -0.01
UPF1-211ENST00000600868 DPYSL4O14531 572 aa15□□□□□ -0.01
UPF1-211ENST00000600868 MOSPD3O75425 235 aa15□□□□□ -0.01
UPF1-211ENST00000600868 ABL1P00519 1130 aa15□□□□□ -0.01
UPF1-211ENST00000600868 PDGFRAP16234 1089 aa15□□□□□ -0.01
UPF1-211ENST00000600868 GPD1P21695 349 aa15□□□□□ -0.01
UPF1-211ENST00000600868 DDX6P26196 483 aaKnown RBP eCLIP15□□□□□ -0.01
UPF1-211ENST00000600868 PTPN9P43378 593 aa15□□□□□ -0.01
UPF1-211ENST00000600868 NOP2P46087 812 aaKnown RBP15□□□□□ -0.01
UPF1-211ENST00000600868 ZNF143P52747 638 aaPredicted RBP15□□□□□ -0.01
UPF1-211ENST00000600868 NTHL1P78549 312 aa15□□□□□ -0.01
UPF1-211ENST00000600868 CCDC85BQ15834 202 aaPredicted RBP15□□□□□ -0.01
UPF1-211ENST00000600868 SLC5A9Q2M3M2 681 aa15□□□□□ -0.01
UPF1-211ENST00000600868 ARHGAP29Q52LW3 1261 aa15□□□□□ -0.01
UPF1-211ENST00000600868 DCAF6Q58WW2 860 aa15□□□□□ -0.01
UPF1-211ENST00000600868 SYPL2Q5VXT5 272 aa15□□□□□ -0.01
UPF1-211ENST00000600868 KLHDC10Q6PID8 442 aa15□□□□□ -0.01
UPF1-211ENST00000600868 EP400NLQ6ZTU2 488 aa15□□□□□ -0.01
UPF1-211ENST00000600868 CCAR2Q8N163 923 aaKnown RBP15□□□□□ -0.01
UPF1-211ENST00000600868 KIAA1524Q8TCG1 905 aa15□□□□□ -0.01
UPF1-211ENST00000600868 RNF139Q8WU17 664 aa15□□□□□ -0.01
UPF1-211ENST00000600868 EDEM1Q92611 657 aa15□□□□□ -0.01
UPF1-211ENST00000600868 NT5C3BQ969T7 300 aa15□□□□□ -0.01
UPF1-211ENST00000600868 TCEAL4Q96EI5 215 aa15□□□□□ -0.01
UPF1-211ENST00000600868 NPY6RQ99463 290 aa15□□□□□ -0.01
UPF1-211ENST00000600868 APOL5Q9BWW9 433 aa15□□□□□ -0.01
UPF1-211ENST00000600868 TRIM7Q9C029 511 aa15□□□□□ -0.01
UPF1-211ENST00000600868 WDR6Q9NNW5 1121 aaKnown RBP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms