RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 C1orf228Q6PIY5 440 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 TADA2BQ86TJ2 420 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 SLC47A2Q86VL8 602 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 CCDC105Q8IYK2 499 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 CPA6Q8N4T0 437 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 FAM3CQ92520 227 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 NDRG1Q92597 394 aaKnown RBP15.29■□□□□ 0.04
VRK3-206ENST00000594090 ATP2A3Q93084 1043 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 ERGIC2Q96RQ1 377 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 CDK5RAP1Q96SZ6 601 aaKnown RBP15.29■□□□□ 0.04
VRK3-206ENST00000594090 CBX8Q9HC52 389 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 FAM207AQ9NSI2 230 aaPredicted RBP15.29■□□□□ 0.04
VRK3-206ENST00000594090 DNMT3LQ9UJW3 386 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 NUDT5Q9UKK9 219 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 PCDHGC3Q9UN70 934 aa15.29■□□□□ 0.04
VRK3-206ENST00000594090 MRPS17Q9Y2R5 130 aaKnown RBP15.29■□□□□ 0.04
VRK3-206ENST00000594090 E2F8A0AVK6 867 aa15.28■□□□□ 0.04
VRK3-206ENST00000594090 SCAMP3O14828 347 aaKnown RBP15.28■□□□□ 0.04
VRK3-206ENST00000594090 EPHB6O15197 1021 aa15.28■□□□□ 0.04
VRK3-206ENST00000594090 DCNP07585 359 aaKnown RBP15.28■□□□□ 0.04
VRK3-206ENST00000594090 IRF1P10914 325 aa15.28■□□□□ 0.04
VRK3-206ENST00000594090 RPL34P49207 117 aaKnown RBP15.28■□□□□ 0.04
VRK3-206ENST00000594090 DAOAP59103 153 aa15.28■□□□□ 0.04
VRK3-206ENST00000594090 RALGPS2Q86X27 583 aaPredicted RBP15.28■□□□□ 0.04
VRK3-206ENST00000594090 NELL2Q99435 816 aa15.28■□□□□ 0.04
VRK3-206ENST00000594090 KLF16Q9BXK1 252 aaPredicted RBP15.28■□□□□ 0.04
VRK3-206ENST00000594090 STK33Q9BYT3 514 aa15.28■□□□□ 0.04
VRK3-206ENST00000594090 OSBPL6Q9BZF3 934 aa15.28■□□□□ 0.04
VRK3-206ENST00000594090 RAPGEFL1Q9UHV5 662 aa15.28■□□□□ 0.04
VRK3-206ENST00000594090 CYTH4Q9UIA0 394 aa15.28■□□□□ 0.04
VRK3-206ENST00000594090 NDRG2Q9UN36 371 aaKnown RBP15.28■□□□□ 0.04
VRK3-206ENST00000594090 MTF2Q9Y483 593 aaPredicted RBP15.28■□□□□ 0.04
VRK3-206ENST00000594090 DAAM1Q9Y4D1 1078 aa15.28■□□□□ 0.04
VRK3-206ENST00000594090 FAM170BA6NMN3 283 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 YJEFN3A6XGL0 299 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 E7ENQ6 273 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 SLC9A3R1O14745 358 aaPredicted RBP15.27■□□□□ 0.04
VRK3-206ENST00000594090 BPIFB4P59827 614 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 POLR2FP61218 127 aaKnown RBP15.27■□□□□ 0.04
VRK3-206ENST00000594090 GOLGA8FQ08AF8 430 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 GOLGA8DPQ0D2H9 430 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 NFKBIBQ15653 356 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 LUZP1Q86V48 1076 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 PASD1Q8IV76 773 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 ZNF687Q8N1G0 1237 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 CLEC4CQ8WTT0 213 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 STK32AQ8WU08 396 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 IRGQQ8WZA9 623 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 WBP2Q969T9 261 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 CHFRQ96EP1 664 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 PCMTD1Q96MG8 357 aaPredicted RBP15.27■□□□□ 0.04
VRK3-206ENST00000594090 LINC00597Q9H2U6 94 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 ECT2Q9H8V3 914 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 ST7Q9NRC1 585 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 DLGAP2Q9P1A6 1054 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 RASAL2Q9UJF2 1139 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 SH3BP1Q9Y3L3 701 aa15.27■□□□□ 0.04
VRK3-206ENST00000594090 FBXO21O94952 628 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 NFATC1O95644 943 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 CAVIN2O95810 425 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 CYP11B1P15538 503 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 KRT9P35527 623 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 ACADSBP45954 432 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 NUBP1P53384 320 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 JAM2P57087 298 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 PDCLQ13371 301 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 BSPRYQ5W0U4 402 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 BTBD8Q5XKL5 378 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 TXNDC11Q6PKC3 985 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 RSRC2Q7L4I2 434 aaKnown RBP15.26■□□□□ 0.03
VRK3-206ENST00000594090 MIB1Q86YT6 1006 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 NEK11Q8NG66 645 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 SLC4A5Q9BY07 1137 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 MIS12Q9H081 205 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 KCNH6Q9H252 994 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 LHX5Q9H2C1 402 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 NLRC4Q9NPP4 1024 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 RTN4Q9NQC3 1192 aaKnown RBP15.26■□□□□ 0.03
VRK3-206ENST00000594090 TBC1D14Q9P2M4 693 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 WDFY4Q6ZS81 3184 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 E5RJQ4 531 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 TPM4P67936 248 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 EFEMP1Q12805 493 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 FZD5Q13467 585 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 FILIP1LQ4L180 1135 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 BBS7Q8IWZ6 715 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 WDTC1Q8N5D0 677 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 DTWD2Q8NBA8 298 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 C1orf131Q8NDD1 294 aaKnown RBP15.26■□□□□ 0.03
VRK3-206ENST00000594090 PRRX2Q99811 253 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 ABCC13Q9NSE7 274 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 OLA1Q9NTK5 396 aaKnown RBP15.26■□□□□ 0.03
VRK3-206ENST00000594090 MARCH2Q9P0N8 246 aa15.26■□□□□ 0.03
VRK3-206ENST00000594090 LSM7Q9UK45 103 aaKnown RBP15.26■□□□□ 0.03
VRK3-206ENST00000594090 A0A1B0GTH6 734 aa15.25■□□□□ 0.03
VRK3-206ENST00000594090 NCAM2O15394 837 aa15.25■□□□□ 0.03
VRK3-206ENST00000594090 TEX33O43247 280 aa15.25■□□□□ 0.03
VRK3-206ENST00000594090 GALR2O43603 387 aaPredicted RBP15.25■□□□□ 0.03
VRK3-206ENST00000594090 GREM1O60565 184 aa15.25■□□□□ 0.03
VRK3-206ENST00000594090 GFPT2O94808 682 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms