RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 CREMQ03060 361 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 LLGL1Q15334 1064 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 GADD45GIP1Q8TAE8 222 aaPredicted RBP26.25■■□□□ 1.79
SHMT1-207ENST00000580002 SLC7A14Q8TBB6 771 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 FAM172AQ8WUF8 416 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 IRGQQ8WZA9 623 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 CAPZA3Q96KX2 299 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 EMILIN2Q9BXX0 1053 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 MAGEB5Q9BZ81 275 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 NGRNQ9NPE2 291 aaKnown RBP26.25■■□□□ 1.79
SHMT1-207ENST00000580002 ASNSD1Q9NWL6 643 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 PLXNA3P51805 1871 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 SYNJ2BP-COX16A0A087WUM0 186 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 MIPP30301 263 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 MAN1A1P33908 653 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 CLCN4P51793 760 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 HDAC4P56524 1084 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 RBM10P98175 930 aaKnown RBP26.25■■□□□ 1.79
SHMT1-207ENST00000580002 ARCQ7LC44 396 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 FBXO32Q969P5 355 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 COX16Q9P0S2 106 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 PCDHA3Q9Y5H8 950 aa26.25■■□□□ 1.79
SHMT1-207ENST00000580002 FAM92AA1XBS5 289 aa26.24■■□□□ 1.79
SHMT1-207ENST00000580002 GLI1P08151 1106 aa26.24■■□□□ 1.79
SHMT1-207ENST00000580002 CTNNA1P35221 906 aaKnown RBP26.24■■□□□ 1.79
SHMT1-207ENST00000580002 KCNT1Q5JUK3 1230 aa26.24■■□□□ 1.79
SHMT1-207ENST00000580002 CYP4V2Q6ZWL3 525 aaPredicted RBP26.24■■□□□ 1.79
SHMT1-207ENST00000580002 KREMEN2Q8NCW0 462 aa26.24■■□□□ 1.79
SHMT1-207ENST00000580002 NPY6RQ99463 290 aa26.24■■□□□ 1.79
SHMT1-207ENST00000580002 ZWILCHQ9H900 591 aa26.24■■□□□ 1.79
SHMT1-207ENST00000580002 FBXW11Q9UKB1 542 aa26.24■■□□□ 1.79
SHMT1-207ENST00000580002 GREB1Q4ZG55 1949 aa26.24■■□□□ 1.79
SHMT1-207ENST00000580002 CLASP2O75122 1294 aaKnown RBP26.23■■□□□ 1.79
SHMT1-207ENST00000580002 EPCAMP16422 314 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 CTNNA2P26232 953 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 NOS2P35228 1153 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 ALDH1A3P47895 512 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 SULT1E1P49888 294 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 SLC25A11Q02978 314 aaKnown RBP26.23■■□□□ 1.79
SHMT1-207ENST00000580002 SMTNL2Q2TAL5 461 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 ANKS1BQ7Z6G8 1248 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 CENPIQ92674 756 aaPredicted RBP26.23■■□□□ 1.79
SHMT1-207ENST00000580002 NT5C3BQ969T7 300 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 TMPRSS4Q9NRS4 437 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 HSFX1Q9UBD0 423 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 MRFAP1Q9Y605 127 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 PDE2AO00408 941 aaPredicted RBP26.23■■□□□ 1.79
SHMT1-207ENST00000580002 CAPN9O14815 690 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 PTPN9P43378 593 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 SCYL2Q6P3W7 929 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 LRRN4CLQ8ND94 238 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 SLC22A17Q8WUG5 538 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 TIFAQ96CG3 184 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 FBXO44Q9H4M3 255 aa26.23■■□□□ 1.79
SHMT1-207ENST00000580002 MYO9BQ13459 2157 aa26.22■■□□□ 1.79
SHMT1-207ENST00000580002 SART1O43290 800 aaKnown RBP26.22■■□□□ 1.79
SHMT1-207ENST00000580002 RTN3O95197 1032 aaPredicted RBP26.22■■□□□ 1.79
SHMT1-207ENST00000580002 TBX18O95935 607 aa26.22■■□□□ 1.79
SHMT1-207ENST00000580002 GLUD1P00367 558 aa26.22■■□□□ 1.79
SHMT1-207ENST00000580002 PYGMP11217 842 aa26.22■■□□□ 1.79
SHMT1-207ENST00000580002 SLC25A52Q3SY17 297 aa26.22■■□□□ 1.79
SHMT1-207ENST00000580002 CREG2Q8IUH2 290 aa26.22■■□□□ 1.79
SHMT1-207ENST00000580002 ZNF638Q14966 1978 aaKnown RBP26.21■■□□□ 1.79
SHMT1-207ENST00000580002 M0QYT0 321 aa26.21■■□□□ 1.79
SHMT1-207ENST00000580002 TRUB2O95900 331 aaKnown RBP26.21■■□□□ 1.79
SHMT1-207ENST00000580002 NME3Q13232 169 aa26.21■■□□□ 1.79
SHMT1-207ENST00000580002 BTBD8Q5XKL5 378 aa26.21■■□□□ 1.79
SHMT1-207ENST00000580002 DNAJB7Q7Z6W7 309 aaPredicted RBP26.21■■□□□ 1.79
SHMT1-207ENST00000580002 MON1AQ86VX9 555 aa26.21■■□□□ 1.79
SHMT1-207ENST00000580002 TTLL2Q9BWV7 592 aa26.21■■□□□ 1.79
SHMT1-207ENST00000580002 ZNF334Q9HCZ1 680 aaPredicted RBP26.21■■□□□ 1.79
SHMT1-207ENST00000580002 GPATCH2LQ9NWQ4 482 aa26.21■■□□□ 1.79
SHMT1-207ENST00000580002 SFMBT1Q9UHJ3 866 aa26.21■■□□□ 1.79
SHMT1-207ENST00000580002 CDC23Q9UJX2 597 aa26.21■■□□□ 1.79
SHMT1-207ENST00000580002 PI4K2BG5E9Z4 385 aa26.2■■□□□ 1.79
SHMT1-207ENST00000580002 NRG2O14511 850 aaPredicted RBP26.2■■□□□ 1.79
SHMT1-207ENST00000580002 MDM4O15151 490 aa26.2■■□□□ 1.79
SHMT1-207ENST00000580002 LPXNO60711 386 aa26.2■■□□□ 1.79
SHMT1-207ENST00000580002 RNF8O76064 485 aa26.2■■□□□ 1.79
SHMT1-207ENST00000580002 C8AP07357 584 aa26.2■■□□□ 1.79
SHMT1-207ENST00000580002 PLD1Q13393 1074 aa26.2■■□□□ 1.79
SHMT1-207ENST00000580002 BNIPLQ7Z465 357 aa26.2■■□□□ 1.79
SHMT1-207ENST00000580002 TAC4Q86UU9 113 aa26.2■■□□□ 1.79
SHMT1-207ENST00000580002 RHOT1Q8IXI2 618 aa26.2■■□□□ 1.79
SHMT1-207ENST00000580002 PIGVQ9NUD9 493 aa26.2■■□□□ 1.79
SHMT1-207ENST00000580002 USP18Q9UMW8 372 aa26.2■■□□□ 1.79
SHMT1-207ENST00000580002 MYO16Q9Y6X6 1858 aa26.2■■□□□ 1.78
SHMT1-207ENST00000580002 MIF4GDA9UHW6 222 aaKnown RBP26.2■■□□□ 1.78
SHMT1-207ENST00000580002 RFPL2O75678 378 aa26.2■■□□□ 1.78
SHMT1-207ENST00000580002 GTF2F1P35269 517 aaKnown RBP eCLIP26.2■■□□□ 1.78
SHMT1-207ENST00000580002 FAM131BQ86XD5 332 aa26.2■■□□□ 1.78
SHMT1-207ENST00000580002 HS6ST3Q8IZP7 471 aa26.2■■□□□ 1.78
SHMT1-207ENST00000580002 DQX1Q8TE96 717 aaKnown RBP26.2■■□□□ 1.78
SHMT1-207ENST00000580002 RAPGEF5Q92565 580 aa26.2■■□□□ 1.78
SHMT1-207ENST00000580002 CASP10Q92851 521 aa26.2■■□□□ 1.78
SHMT1-207ENST00000580002 ANLNQ9NQW6 1124 aa26.2■■□□□ 1.78
SHMT1-207ENST00000580002 CCDC66A2RUB6 948 aa26.19■■□□□ 1.78
SHMT1-207ENST00000580002 CEP104O60308 925 aa26.19■■□□□ 1.78
SHMT1-207ENST00000580002 PRLRP16471 622 aa26.19■■□□□ 1.78
SHMT1-207ENST00000580002 CCDC185Q8N715 623 aa26.19■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms