RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 MYOCQ99972 504 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 SLC13A1Q9BZW2 595 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 MAF1Q9H063 256 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 RNPEPQ9H4A4 650 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ZDHHC6Q9H6R6 413 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 PDGFCQ9NRA1 345 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 NSMCE4AQ9NXX6 385 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ZFATQ9P243 1243 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 KLHL14Q9P2G3 628 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 FAM198AQ9UFP1 575 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 TRMT6Q9UJA5 497 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 BRPF3Q9ULD4 1205 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 EXOC1LA0A1B0GW35 172 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ZSCAN5CA6NGD5 496 aaPredicted RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 URADA6NGE7 173 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ACSL4O60488 711 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 RNASEH2AO75792 299 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 EOMESO95936 686 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 IFNA16P05015 189 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 JMJD7P0C870 316 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 TYK2P29597 1187 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 AKT2P31751 481 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 GTF2H1P32780 548 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 WASP42768 502 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 NRLP54845 237 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ZNF280AP59817 542 aaPredicted RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 EIF3EP60228 445 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 IL9RQ01113 521 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 GFPT1Q06210 699 aaPredicted RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ART3Q13508 389 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 TRADDQ15628 312 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 TARBP2Q15633 366 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 SEZ6Q53EL9 994 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 COBLL1Q53SF7 1204 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ZBTB41Q5SVQ8 909 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ARMC12Q5T9G4 340 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 MARC1Q5VT66 337 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 OTOP1Q7RTM1 612 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 PTF1AQ7RTS3 328 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 TAF8Q7Z7C8 310 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ZNF677Q86XU0 584 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 TRAPPC5Q8IUR0 188 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 GRAMD1CQ8IYS0 662 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 DSELQ8IZU8 1212 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 MYO1HQ8N1T3 1032 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 OXER1Q8TDS5 423 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 BADQ92934 168 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 MFSD14AQ96MC6 490 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 SLC4A9Q96Q91 983 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 MTMR12Q9C0I1 747 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ARMC7Q9H6L4 198 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 SYTL2Q9HCH5 934 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 IL23AQ9NPF7 189 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 TLR9Q9NR96 1032 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ABCC13Q9NSE7 274 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 INTS7Q9NVH2 962 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 WWOXQ9NZC7 414 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 UBA2Q9UBT2 640 aaPredicted RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 RCOR1Q9UKL0 485 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 CDH9Q9ULB4 789 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 PACSIN2Q9UNF0 486 aaPredicted RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 TDRKHQ9Y2W6 561 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 AAR2Q9Y312 384 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 FAM32AQ9Y421 112 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 L3MBTL1Q9Y468 752 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ASB3Q9Y575 518 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 CDY1Q9Y6F8 540 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 COL1A2P08123 1366 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 CPED1A4D0V7 1026 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 C9J4A7 227 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 GOLGA8TH3BQL2 631 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 EBAG9O00559 213 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ZSCAN9O15535 394 aaPredicted RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 NUDT14O95848 222 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 VIPP01282 170 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 CNPP09543 421 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ITGB6P18564 788 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 CASP14P31944 242 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 PEX5P50542 639 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 PLTPP55058 493 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 HDAC4P56524 1084 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 TAS2R50P59544 299 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ATP2C1P98194 919 aaPredicted RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 KDSRQ06136 332 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 DHX9Q08211 1270 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 XKR4Q5GH76 650 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ZC3H12BQ5HYM0 836 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 IZUMO3Q5VZ72 239 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 RAET1GQ6H3X3 334 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 TATDN1Q6P1N9 297 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 C4orf22Q6V702 233 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 PTAR1Q7Z6K3 402 aaPredicted RBP3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 SLFN11Q7Z7L1 901 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 RASSF3Q86WH2 238 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 HMGB4Q8WW32 186 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 ING5Q8WYH8 240 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 HLA-CQ95604 372 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 TADA1Q96BN2 335 aa3.03□□□□□ -1.92
SMCHD1-203ENST00000577880 FOXP3Q9BZS1 431 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms