RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 CCDC122Q5T0U0 273 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 HECTD3Q5T447 861 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 BSPRYQ5W0U4 402 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 BTBD8Q5XKL5 378 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 ALKBH5Q6P6C2 394 aaKnown RBP8.98□□□□□ -0.97
NUP88-211ENST00000575976 OLFML1Q6UWY5 402 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 MON1BQ7L1V2 547 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 OTOP3Q7RTS5 596 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 XYLT1Q86Y38 959 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 MCOLN2Q8IZK6 566 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 ARHGAP18Q8N392 663 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 ARL14EPQ8N8R7 260 aaPredicted RBP8.98□□□□□ -0.97
NUP88-211ENST00000575976 MSANTD4Q8NCY6 345 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 ST13P5Q8NFI4 369 aaPredicted RBP8.98□□□□□ -0.97
NUP88-211ENST00000575976 EDEM1Q92611 657 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 KHSRPQ92945 711 aaKnown RBP eCLIP8.98□□□□□ -0.97
NUP88-211ENST00000575976 FAM149B1Q96BN6 582 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 RPGRIP1Q96KN7 1286 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 CCDC42Q96M95 316 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 SLC22A12Q96S37 553 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 CYP2S1Q96SQ9 504 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 RNF38Q9H0F5 515 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 ISCUQ9H1K1 167 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 SLITRK6Q9H5Y7 841 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 CCSER2Q9H7U1 834 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 SPTLC3Q9NUV7 552 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.98□□□□□ -0.97
NUP88-211ENST00000575976 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.98□□□□□ -0.97
NUP88-211ENST00000575976 NENFQ9UMX5 172 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 FAM50BQ9Y247 325 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 USTQ9Y2C2 406 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 REV3LO60673 3130 aa8.98□□□□□ -0.97
NUP88-211ENST00000575976 TRAV19A0A0A6YYK7 116 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 SOBPA7XYQ1 873 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 GOLGA8SH3BPF8 625 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 MDM4O15151 490 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 SART1O43290 800 aaKnown RBP8.97□□□□□ -0.97
NUP88-211ENST00000575976 COCHO43405 550 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 TLR5O60602 858 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 GRAP2O75791 330 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 GJB6O95452 261 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 OLFM2O95897 454 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 TBX18O95935 607 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 OAS1P00973 400 aaKnown RBP8.97□□□□□ -0.97
NUP88-211ENST00000575976 LTFP02788 710 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 CALB1P05937 261 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 RALAP11233 206 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 LAMP2P13473 410 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 HDCP19113 662 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 RRM1P23921 792 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 DDX6P26196 483 aaKnown RBP eCLIP8.97□□□□□ -0.97
NUP88-211ENST00000575976 GSCP56915 257 aaPredicted RBP8.97□□□□□ -0.97
NUP88-211ENST00000575976 NHLH1Q02575 133 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 SLC18A3Q16572 532 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 FAM78AQ5JUQ0 283 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 EFHC1Q5JVL4 640 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 FAM102AQ5T9C2 384 aaPredicted RBP8.97□□□□□ -0.97
NUP88-211ENST00000575976 SYPL2Q5VXT5 272 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 PPP1R2P3Q6NXS1 205 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 TOGARAM2Q6ZUX3 1019 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 SLC26A9Q7LBE3 791 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 ZDHHC17Q8IUH5 632 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 TMTC1Q8IUR5 882 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 TMEM139Q8IV31 216 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 ARID3BQ8IVW6 561 aaPredicted RBP8.97□□□□□ -0.97
NUP88-211ENST00000575976 CMTM8Q8IZV2 173 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 DEFB106AQ8N104 65 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 TDRD5Q8NAT2 981 aaKnown RBP8.97□□□□□ -0.97
NUP88-211ENST00000575976 ZSCAN18Q8TBC5 510 aaPredicted RBP8.97□□□□□ -0.97
NUP88-211ENST00000575976 ANP32BQ92688 251 aaKnown RBP8.97□□□□□ -0.97
NUP88-211ENST00000575976 GOLGA1Q92805 767 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 ACSF2Q96CM8 615 aaPredicted RBP8.97□□□□□ -0.97
NUP88-211ENST00000575976 VCPIP1Q96JH7 1222 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 BAG1Q99933 345 aaPredicted RBP8.97□□□□□ -0.97
NUP88-211ENST00000575976 SMG9Q9H0W8 520 aaKnown RBP8.97□□□□□ -0.97
NUP88-211ENST00000575976 ABCC13Q9NSE7 274 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 ASNSD1Q9NWL6 643 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 CLIC5Q9NZA1 410 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 GDE1Q9NZC3 331 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 WDR35Q9P2L0 1181 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 STRIP2Q9ULQ0 834 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 NAALADL1Q9UQQ1 740 aa8.97□□□□□ -0.97
NUP88-211ENST00000575976 ZNF638Q14966 1978 aaKnown RBP8.96□□□□□ -0.98
NUP88-211ENST00000575976 TCRBV5S1A1TA0A578 114 aa8.96□□□□□ -0.98
NUP88-211ENST00000575976 SOWAHDA6NJG2 315 aa8.96□□□□□ -0.98
NUP88-211ENST00000575976 LOC730098B7Z3J9 87 aa8.96□□□□□ -0.98
NUP88-211ENST00000575976 ZNF263O14978 683 aa8.96□□□□□ -0.98
NUP88-211ENST00000575976 CKMP06732 381 aa8.96□□□□□ -0.98
NUP88-211ENST00000575976 GLI1P08151 1106 aa8.96□□□□□ -0.98
NUP88-211ENST00000575976 MBL2P11226 248 aaPredicted RBP8.96□□□□□ -0.98
NUP88-211ENST00000575976 NCAM1P13591 858 aa8.96□□□□□ -0.98
NUP88-211ENST00000575976 PFKLP17858 780 aa8.96□□□□□ -0.98
NUP88-211ENST00000575976 ABCB4P21439 1286 aa8.96□□□□□ -0.98
NUP88-211ENST00000575976 CYLC1P35663 651 aaPredicted RBP8.96□□□□□ -0.98
NUP88-211ENST00000575976 ATP5C1P36542 298 aaKnown RBP8.96□□□□□ -0.98
NUP88-211ENST00000575976 SCNN1AP37088 669 aa8.96□□□□□ -0.98
NUP88-211ENST00000575976 TUBP50607 506 aa8.96□□□□□ -0.98
NUP88-211ENST00000575976 GALCP54803 685 aa8.96□□□□□ -0.98
NUP88-211ENST00000575976 RNASE9P60153 205 aaKnown RBP8.96□□□□□ -0.98
NUP88-211ENST00000575976 YWHAZP63104 245 aaKnown RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms