RNA–Protein interactions for RNA: ENST00000574099.1

CCDC40-211, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 537 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-211ENST00000574099 SETD7Q8WTS6 366 aaKnown RBP18.58■□□□□ 0.56
CCDC40-211ENST00000574099 SCFD1Q8WVM8 642 aa18.58■□□□□ 0.56
CCDC40-211ENST00000574099 OVCA2Q8WZ82 227 aa18.58■□□□□ 0.56
CCDC40-211ENST00000574099 HPS3Q969F9 1004 aa18.58■□□□□ 0.56
CCDC40-211ENST00000574099 LRIG1Q96JA1 1093 aa18.58■□□□□ 0.56
CCDC40-211ENST00000574099 MRGPRX1Q96LB2 322 aa18.58■□□□□ 0.56
CCDC40-211ENST00000574099 BBC3Q96PG8 261 aaPredicted RBP18.58■□□□□ 0.56
CCDC40-211ENST00000574099 MED10Q9BTT4 135 aa18.58■□□□□ 0.56
CCDC40-211ENST00000574099 BBS2Q9BXC9 721 aa18.58■□□□□ 0.56
CCDC40-211ENST00000574099 HSPBP1Q9NZL4 362 aa18.58■□□□□ 0.56
CCDC40-211ENST00000574099 NXF1Q9UBU9 619 aaKnown RBP18.58■□□□□ 0.56
CCDC40-211ENST00000574099 FBXO2Q9UK22 296 aaPredicted RBP18.58■□□□□ 0.56
CCDC40-211ENST00000574099 IGSF10Q6WRI0 2623 aa18.57■□□□□ 0.56
CCDC40-211ENST00000574099 FRMD3A2A2Y4 597 aa18.57■□□□□ 0.56
CCDC40-211ENST00000574099 KIAA0391O15091 583 aaKnown RBP18.57■□□□□ 0.56
CCDC40-211ENST00000574099 CLSTN1O94985 981 aa18.57■□□□□ 0.56
CCDC40-211ENST00000574099 CD2BP2O95400 341 aaKnown RBP18.57■□□□□ 0.56
CCDC40-211ENST00000574099 ZIC2O95409 532 aaPredicted RBP18.57■□□□□ 0.56
CCDC40-211ENST00000574099 TYRP14679 529 aa18.57■□□□□ 0.56
CCDC40-211ENST00000574099 TNNI1P19237 187 aa18.57■□□□□ 0.56
CCDC40-211ENST00000574099 STAT6P42226 847 aa18.57■□□□□ 0.56
CCDC40-211ENST00000574099 FAM35AQ86V20 835 aa18.57■□□□□ 0.56
CCDC40-211ENST00000574099 ZCCHC9Q8N567 271 aaKnown RBP18.57■□□□□ 0.56
CCDC40-211ENST00000574099 BHMTQ93088 406 aa18.57■□□□□ 0.56
CCDC40-211ENST00000574099 GABRG3Q99928 467 aa18.57■□□□□ 0.56
CCDC40-211ENST00000574099 PANK2Q9BZ23 570 aa18.57■□□□□ 0.56
CCDC40-211ENST00000574099 MIR1-1HGQ9H1L0 117 aa18.57■□□□□ 0.56
CCDC40-211ENST00000574099 IL21RQ9HBE5 538 aa18.57■□□□□ 0.56
CCDC40-211ENST00000574099 GCN1Q92616 2671 aaKnown RBP18.57■□□□□ 0.56
CCDC40-211ENST00000574099 MYH10P35580 1976 aa18.57■□□□□ 0.56
CCDC40-211ENST00000574099 ATP8B3O60423 1300 aa18.56■□□□□ 0.56
CCDC40-211ENST00000574099 WASH3PC4AMC7 463 aa18.56■□□□□ 0.56
CCDC40-211ENST00000574099 CACNG3O60359 315 aa18.56■□□□□ 0.56
CCDC40-211ENST00000574099 PGFP49763 221 aa18.56■□□□□ 0.56
CCDC40-211ENST00000574099 WDR45BQ5MNZ6 344 aa18.56■□□□□ 0.56
CCDC40-211ENST00000574099 MARCH9Q86YJ5 346 aa18.56■□□□□ 0.56
CCDC40-211ENST00000574099 FOXJ1Q92949 421 aa18.56■□□□□ 0.56
CCDC40-211ENST00000574099 CCDC127Q96BQ5 260 aa18.56■□□□□ 0.56
CCDC40-211ENST00000574099 XPO6Q96QU8 1125 aaKnown RBP18.56■□□□□ 0.56
CCDC40-211ENST00000574099 PCOLCE2Q9UKZ9 415 aa18.56■□□□□ 0.56
CCDC40-211ENST00000574099 SMG1Q96Q15 3661 aaKnown RBP18.55■□□□□ 0.56
CCDC40-211ENST00000574099 A0A087X0B3 334 aa18.55■□□□□ 0.56
CCDC40-211ENST00000574099 TLR5O60602 858 aa18.55■□□□□ 0.56
CCDC40-211ENST00000574099 CBFA2T3O75081 653 aa18.55■□□□□ 0.56
CCDC40-211ENST00000574099 CD6P30203 668 aa18.55■□□□□ 0.56
CCDC40-211ENST00000574099 TUBP50607 506 aa18.55■□□□□ 0.56
CCDC40-211ENST00000574099 MYL6P60660 151 aa18.55■□□□□ 0.56
CCDC40-211ENST00000574099 RABEP1Q15276 862 aa18.55■□□□□ 0.56
CCDC40-211ENST00000574099 SNRNP35Q16560 246 aaKnown RBP18.55■□□□□ 0.56
CCDC40-211ENST00000574099 SNX30Q5VWJ9 437 aa18.55■□□□□ 0.56
CCDC40-211ENST00000574099 TOE1Q96GM8 510 aaKnown RBP18.55■□□□□ 0.56
CCDC40-211ENST00000574099 CGRRF1Q99675 332 aa18.55■□□□□ 0.56
CCDC40-211ENST00000574099 GPR174Q9BXC1 333 aa18.55■□□□□ 0.56
CCDC40-211ENST00000574099 SMYD3Q9H7B4 428 aa18.55■□□□□ 0.56
CCDC40-211ENST00000574099 DMAP1Q9NPF5 467 aaPredicted RBP18.55■□□□□ 0.56
CCDC40-211ENST00000574099 KRT82Q9NSB4 513 aa18.55■□□□□ 0.56
CCDC40-211ENST00000574099 ACACAQ13085 2346 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 A0A1B0GTW7 788 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 VPS37CA5D8V6 355 aaPredicted RBP18.54■□□□□ 0.56
CCDC40-211ENST00000574099 EIF4E1BA6NMX2 242 aaKnown RBP18.54■□□□□ 0.56
CCDC40-211ENST00000574099 GOLGA8CPA6NN73 597 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 TBX18O95935 607 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 NCAM1P13591 858 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 DGKGP49619 791 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 CDH8P55286 799 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 CEBPZQ03701 1054 aaKnown RBP18.54■□□□□ 0.56
CCDC40-211ENST00000574099 TRPC3Q13507 836 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 SCARA5Q6ZMJ2 495 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 CCDC73Q6ZRK6 1079 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 PAQR9Q6ZVX9 377 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 STXBP4Q6ZWJ1 553 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 GLRX5Q86SX6 157 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 CCDC65Q8IXS2 484 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 ELMO3Q96BJ8 720 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 SMARCD1Q96GM5 515 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 DUSP9Q99956 384 aaKnown RBP18.54■□□□□ 0.56
CCDC40-211ENST00000574099 ZDHHC5Q9C0B5 715 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 GAREM1Q9H706 876 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 PPP4R2Q9NY27 417 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 PLK2Q9NYY3 685 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 FNDC3AQ9Y2H6 1198 aaKnown RBP18.54■□□□□ 0.56
CCDC40-211ENST00000574099 SRPRBQ9Y5M8 271 aaKnown RBP18.54■□□□□ 0.56
CCDC40-211ENST00000574099 APC2O95996 2303 aa18.54■□□□□ 0.56
CCDC40-211ENST00000574099 GREM1O60565 184 aa18.53■□□□□ 0.56
CCDC40-211ENST00000574099 AP1G2O75843 785 aa18.53■□□□□ 0.56
CCDC40-211ENST00000574099 ZDHHC11BP0C7U3 371 aa18.53■□□□□ 0.56
CCDC40-211ENST00000574099 HOXD13P35453 343 aa18.53■□□□□ 0.56
CCDC40-211ENST00000574099 CYP2J2P51589 502 aa18.53■□□□□ 0.56
CCDC40-211ENST00000574099 FUT11Q495W5 492 aa18.53■□□□□ 0.56
CCDC40-211ENST00000574099 HTR3DQ70Z44 454 aa18.53■□□□□ 0.56
CCDC40-211ENST00000574099 CACUL1Q86Y37 369 aa18.53■□□□□ 0.56
CCDC40-211ENST00000574099 PRDM16Q9HAZ2 1276 aa18.53■□□□□ 0.56
CCDC40-211ENST00000574099 KIAA1586Q9HCI6 787 aa18.53■□□□□ 0.56
CCDC40-211ENST00000574099 STON1Q9Y6Q2 735 aa18.53■□□□□ 0.56
CCDC40-211ENST00000574099 CLIC2O15247 247 aa18.52■□□□□ 0.56
CCDC40-211ENST00000574099 CILPO75339 1184 aa18.52■□□□□ 0.56
CCDC40-211ENST00000574099 FAM163BP0C2L3 166 aa18.52■□□□□ 0.56
CCDC40-211ENST00000574099 ATXN1LP0C7T5 689 aaKnown RBP18.52■□□□□ 0.56
CCDC40-211ENST00000574099 CCDC130P13994 396 aa18.52■□□□□ 0.56
CCDC40-211ENST00000574099 MATKP42679 507 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms