RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 SYCP2LQ5T4T6 812 aa10.51□□□□□ -0.73
SMG6-213ENST00000573166 SLC13A5Q86YT5 568 aaPredicted RBP10.51□□□□□ -0.73
SMG6-213ENST00000573166 CCDC33Q8N5R6 958 aa10.51□□□□□ -0.73
SMG6-213ENST00000573166 PDZD8Q8NEN9 1154 aa10.51□□□□□ -0.73
SMG6-213ENST00000573166 FBXO22Q8NEZ5 403 aa10.51□□□□□ -0.73
SMG6-213ENST00000573166 WNT8BQ93098 351 aa10.51□□□□□ -0.73
SMG6-213ENST00000573166 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.51□□□□□ -0.73
SMG6-213ENST00000573166 SIGLEC16A6NMB1 481 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 HAS3O00219 553 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 GIPC1O14908 333 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 XPO1O14980 1071 aaKnown RBP10.5□□□□□ -0.73
SMG6-213ENST00000573166 TYMPP19971 482 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 HNRNPH3P31942 346 aaKnown RBP10.5□□□□□ -0.73
SMG6-213ENST00000573166 SF3A3Q12874 501 aaKnown RBP eCLIP10.5□□□□□ -0.73
SMG6-213ENST00000573166 IFNLR1Q8IU57 520 aaPredicted RBP10.5□□□□□ -0.73
SMG6-213ENST00000573166 GSPT2Q8IYD1 628 aaKnown RBP10.5□□□□□ -0.73
SMG6-213ENST00000573166 CARNMT1Q8N4J0 409 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 TTC25Q96NG3 672 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 FIZ1Q96SL8 496 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 DPEP3Q9H4B8 488 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 CNGB3Q9NQW8 809 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 MYH9P35579 1960 aaKnown RBP10.5□□□□□ -0.73
SMG6-213ENST00000573166 MYO7AQ13402 2215 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 CFAP69A5D8W1 941 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 FAM187AA6NFU0 413 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 ARHGAP42A6NI28 874 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 TSPAN3O60637 253 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 ZNF623O75123 536 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 ACSL3O95573 720 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 MIPP30301 263 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 HOXA11P31270 313 aaPredicted RBP10.5□□□□□ -0.73
SMG6-213ENST00000573166 DHX34Q14147 1143 aaKnown RBP10.5□□□□□ -0.73
SMG6-213ENST00000573166 SOWAHAQ2M3V2 549 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 MARCH8Q5T0T0 291 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 ERMARDQ5T6L9 678 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 IZUMO3Q5VZ72 239 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 CRELD2Q6UXH1 353 aaPredicted RBP10.5□□□□□ -0.73
SMG6-213ENST00000573166 AGMOQ6ZNB7 445 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 HERC6Q8IVU3 1022 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 SLC4A11Q8NBS3 891 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 PLEKHO2Q8TD55 490 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 B3GNT5Q9BYG0 378 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 HSD3B7Q9H2F3 369 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 RARGP13631 454 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 EN2P19622 333 aaPredicted RBP10.5□□□□□ -0.73
SMG6-213ENST00000573166 MAMLD1Q13495 774 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 HP1BP3Q5SSJ5 553 aaPredicted RBP10.5□□□□□ -0.73
SMG6-213ENST00000573166 HHATQ5VTY9 493 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 C11orf63Q6NUN7 778 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 TFAP2DQ7Z6R9 452 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 PGBD3Q8N328 593 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 PCED1BQ96HM7 432 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 TBCBQ99426 244 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 CIPCQ9C0C6 399 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 TKTL2Q9H0I9 626 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 RGS18Q9NS28 235 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 C3orf70A6NLC5 250 aaPredicted RBP10.5□□□□□ -0.73
SMG6-213ENST00000573166 GOLGA8CPA6NN73 597 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 STBD1O95210 358 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 GABRR2P28476 465 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 PHF13Q86YI8 300 aaPredicted RBP10.5□□□□□ -0.73
SMG6-213ENST00000573166 KLHDC9Q8NEP7 349 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 USP6NLQ92738 828 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 ABCB6Q9NP58 842 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 STK39Q9UEW8 545 aa10.5□□□□□ -0.73
SMG6-213ENST00000573166 MRPL42Q9Y6G3 142 aaKnown RBP10.5□□□□□ -0.73
SMG6-213ENST00000573166 MYH11P35749 1972 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 TLR5O60602 858 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 PHF2O75151 1096 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 SP100P23497 879 aaPredicted RBP10.49□□□□□ -0.73
SMG6-213ENST00000573166 GARSP41250 739 aaKnown RBP10.49□□□□□ -0.73
SMG6-213ENST00000573166 SLC11A1P49279 550 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 PSEN1P49768 467 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 TWF1Q12792 350 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 TAF10Q12962 218 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 PTPN20Q4JDL3 420 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 ZC3H12AQ5D1E8 599 aaKnown RBP10.49□□□□□ -0.73
SMG6-213ENST00000573166 MON1AQ86VX9 555 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 CCDC13Q8IYE1 715 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 EXD1Q8NHP7 514 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 CCDC110Q8TBZ0 833 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 AUTS2Q8WXX7 1259 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 IL23AQ9NPF7 189 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 VPS28Q9UK41 221 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 TTI1O43156 1089 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 MTSS1O43312 755 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 ZNF189O75820 626 aaPredicted RBP10.49□□□□□ -0.73
SMG6-213ENST00000573166 RHOCP08134 193 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 MSH2P43246 934 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 SESN2P58004 480 aaPredicted RBP10.49□□□□□ -0.73
SMG6-213ENST00000573166 RPL7AP62424 266 aaKnown RBP10.49□□□□□ -0.73
SMG6-213ENST00000573166 MRPS5P82675 430 aaKnown RBP10.49□□□□□ -0.73
SMG6-213ENST00000573166 CENPCQ03188 943 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 NUGGCQ68CJ6 796 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 ZNF280BQ86YH2 543 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 WHAMMQ8TF30 809 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 TFAP2BQ92481 460 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 ZMAT2Q96NC0 199 aaKnown RBP10.49□□□□□ -0.73
SMG6-213ENST00000573166 CPXM1Q96SM3 734 aa10.49□□□□□ -0.73
SMG6-213ENST00000573166 GAS2L1Q99501 681 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms