RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 KATNA1O75449 491 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 MTA2O94776 668 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 CCDC130P13994 396 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 NR1H2P55055 460 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 IL9RQ01113 521 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 COASYQ13057 564 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 IKQ13123 557 aaPredicted RBP11.23□□□□□ -0.61
CLK3-226ENST00000569406 DSC3Q14574 896 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 CYP4A22Q5TCH4 519 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 SV2BQ7L1I2 683 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 CLNKQ7Z7G1 428 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 CAND1Q86VP6 1230 aaKnown RBP11.23□□□□□ -0.61
CLK3-226ENST00000569406 DNAAF5Q86Y56 855 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 CADM3Q8N126 398 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 GMCL1P1Q8NEA9 526 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 TSG101Q99816 390 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 CDH19Q9H159 772 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 SP140LQ9H930 580 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 NPHS2Q9NP85 383 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 BMP2KQ9NSY1 1161 aaPredicted RBP11.23□□□□□ -0.61
CLK3-226ENST00000569406 PGAP2Q9UHJ9 254 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 BCAP29Q9UHQ4 241 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 PLAGL2Q9UPG8 496 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 CNTNAP1P78357 1384 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 PGRMC1O00264 195 aaKnown RBP11.23□□□□□ -0.61
CLK3-226ENST00000569406 NAGAP17050 411 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 CLK1P49759 484 aaKnown RBP11.23□□□□□ -0.61
CLK3-226ENST00000569406 MAPK6Q16659 721 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 AOC3Q16853 763 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 OTOP3Q7RTS5 596 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 CROCCP2Q86T23 111 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 SRRM1Q8IYB3 904 aaKnown RBP11.23□□□□□ -0.61
CLK3-226ENST00000569406 DDI1Q8WTU0 396 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 C12orf10Q9HB07 376 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 TRIM39Q9HCM9 518 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 DCAF16Q9NXF7 216 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 TAS2R1Q9NYW7 299 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 KCNN3Q9UGI6 736 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 VANGL2Q9ULK5 521 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 PCDHGB4Q9UN71 923 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 NOC2LQ9Y3T9 749 aaKnown RBP11.23□□□□□ -0.61
CLK3-226ENST00000569406 PCDHGB5Q9Y5G0 923 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 PITPNM2Q9BZ72 1349 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 POTEB3A0JP26 581 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 POTECB2RU33 542 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 PHF2O75151 1096 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 GDF11O95390 407 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 CXCR2P25025 360 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 POTEBQ6S5H4 581 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 ATP6V0D2Q8N8Y2 350 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 FBXO25Q8TCJ0 367 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 SCFD1Q8WVM8 642 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 MAP6Q96JE9 813 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 CITED4Q96RK1 184 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 ZNF717Q9BY31 904 aaPredicted RBP11.23□□□□□ -0.61
CLK3-226ENST00000569406 VAV3Q9UKW4 847 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 STXBP5LQ9Y2K9 1186 aa11.23□□□□□ -0.61
CLK3-226ENST00000569406 CENPBD1B2RD01 187 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 ATMINO43313 823 aaPredicted RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 ACSL3O95573 720 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 NDUFB10O96000 172 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 RAP1GDS1P52306 607 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 GNG2P59768 71 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 HNRNPDQ14103 355 aaKnown RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 PPP6R3Q5H9R7 873 aaPredicted RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 SNAP47Q5SQN1 464 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 STYK1Q6J9G0 422 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 CPSF7Q8N684 471 aaKnown RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 GMCL1Q96IK5 515 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 NSL1Q96IY1 281 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 CCDC17Q96LX7 622 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 TSNARE1Q96NA8 513 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 THTPAQ9BU02 230 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 BEGAINQ9BUH8 593 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 TRIM55Q9BYV6 548 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 SERHL2Q9H4I8 314 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 PCSK1NQ9UHG2 260 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 RIMKLBQ9ULI2 386 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 PCDHA1Q9Y5I3 950 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 A0A0G2JND7 137 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 F5H6K3 240 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 HNRNPCL1O60812 293 aaKnown RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 PAHP00439 452 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 DBTP11182 482 aaKnown RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 CACNB1Q02641 598 aaPredicted RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 KLRC3Q07444 240 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 OASLQ15646 514 aaKnown RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 NFE2Q16621 373 aaPredicted RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 PERM1Q5SV97 790 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 C10orf62Q5T681 223 aaPredicted RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 BTNL9Q6UXG8 535 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 CYP2U1Q7Z449 544 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 NLRX1Q86UT6 975 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 RFWD2Q8NHY2 731 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 SLC26A7Q8TE54 656 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 PSPC1Q8WXF1 523 aaKnown RBP11.22□□□□□ -0.61
CLK3-226ENST00000569406 RMDN1Q96DB5 314 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 BIRC8Q96P09 236 aa11.22□□□□□ -0.61
CLK3-226ENST00000569406 TDRD3Q9H7E2 651 aaKnown RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms