RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 LSM7Q9UK45 103 aaKnown RBP23.68■■□□□ 1.38
CLN3-215ENST00000565236 CDV3Q9UKY7 258 aaKnown RBP23.68■■□□□ 1.38
CLN3-215ENST00000565236 CACNA1AO00555 2505 aa23.68■■□□□ 1.38
CLN3-215ENST00000565236 A0A0A0MRY4 1105 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 PPP1R2P41236 205 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 PSEN1P49768 467 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 DGKEP52429 567 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 KDSRQ06136 332 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 MESP2Q0VG99 397 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 CSRP2Q16527 193 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 ANO4Q32M45 955 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 PREPLQ4J6C6 727 aaPredicted RBP23.67■■□□□ 1.38
CLN3-215ENST00000565236 C10orf120Q5SQS8 335 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 CCDC186Q7Z3E2 898 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 TMEM25Q86YD3 366 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 NAT16Q8N8M0 369 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 LOXL4Q96JB6 756 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 METTL14Q9HCE5 456 aaKnown RBP23.67■■□□□ 1.38
CLN3-215ENST00000565236 MTPAPQ9NVV4 582 aaKnown RBP eCLIP23.67■■□□□ 1.38
CLN3-215ENST00000565236 DNMT3LQ9UJW3 386 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 MAN1B1Q9UKM7 699 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 MMP17Q9ULZ9 603 aa23.67■■□□□ 1.38
CLN3-215ENST00000565236 DYNC1LI1Q9Y6G9 523 aaKnown RBP23.67■■□□□ 1.38
CLN3-215ENST00000565236 KIAA1549LQ6ZVL6 1849 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 ANTXRLA6NF34 631 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 HOXC11O43248 304 aaPredicted RBP23.66■■□□□ 1.38
CLN3-215ENST00000565236 TNFRSF4P43489 277 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 PLA2G4AP47712 749 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 SLC8A3P57103 927 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 KLHDC10Q6PID8 442 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 TADA2BQ86TJ2 420 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 SFTPA1Q8IWL2 248 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 SLC35C1Q96A29 364 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 UBXN6Q9BZV1 441 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 ARRDC1-AS1Q9H2J1 176 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 DEC1Q9P2X7 70 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 NUDT5Q9UKK9 219 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 USP3Q9Y6I4 520 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 DNAH14Q0VDD8 3507 aa23.66■■□□□ 1.38
CLN3-215ENST00000565236 TBC1D3BA6NDS4 549 aa23.65■■□□□ 1.38
CLN3-215ENST00000565236 FOXD2O60548 495 aaPredicted RBP23.65■■□□□ 1.38
CLN3-215ENST00000565236 RALAP11233 206 aa23.65■■□□□ 1.38
CLN3-215ENST00000565236 TIE1P35590 1138 aa23.65■■□□□ 1.38
CLN3-215ENST00000565236 YWHAEP62258 255 aaKnown RBP23.65■■□□□ 1.38
CLN3-215ENST00000565236 CUL2Q13617 745 aa23.65■■□□□ 1.38
CLN3-215ENST00000565236 HSF5Q4G112 596 aaPredicted RBP23.65■■□□□ 1.38
CLN3-215ENST00000565236 EMC10Q5UCC4 262 aa23.65■■□□□ 1.38
CLN3-215ENST00000565236 ARHGAP17Q68EM7 881 aa23.65■■□□□ 1.38
CLN3-215ENST00000565236 PRR23CQ6ZRP0 262 aa23.65■■□□□ 1.38
CLN3-215ENST00000565236 NUDT18Q6ZVK8 323 aa23.65■■□□□ 1.38
CLN3-215ENST00000565236 SCD5Q86SK9 330 aa23.65■■□□□ 1.38
CLN3-215ENST00000565236 ALLCQ8N6M5 410 aa23.65■■□□□ 1.38
CLN3-215ENST00000565236 ANKRD52Q8NB46 1076 aa23.65■■□□□ 1.38
CLN3-215ENST00000565236 ZC3H10Q96K80 434 aaKnown RBP23.65■■□□□ 1.38
CLN3-215ENST00000565236 EML5Q05BV3 1969 aa23.64■■□□□ 1.38
CLN3-215ENST00000565236 MDM4O15151 490 aa23.64■■□□□ 1.37
CLN3-215ENST00000565236 GREM1O60565 184 aa23.64■■□□□ 1.37
CLN3-215ENST00000565236 TULP3O75386 442 aa23.64■■□□□ 1.37
CLN3-215ENST00000565236 KLF8O95600 359 aaPredicted RBP23.64■■□□□ 1.37
CLN3-215ENST00000565236 CD44P16070 742 aaKnown RBP23.64■■□□□ 1.37
CLN3-215ENST00000565236 ATXN1P54253 815 aaKnown RBP23.64■■□□□ 1.37
CLN3-215ENST00000565236 LRMPQ12912 555 aa23.64■■□□□ 1.37
CLN3-215ENST00000565236 CRY1Q16526 586 aa23.64■■□□□ 1.37
CLN3-215ENST00000565236 CCDC40Q4G0X9 1142 aa23.64■■□□□ 1.37
CLN3-215ENST00000565236 KLHL10Q6JEL2 608 aa23.64■■□□□ 1.37
CLN3-215ENST00000565236 ETFBKMTQ8IXQ9 262 aa23.64■■□□□ 1.37
CLN3-215ENST00000565236 ZNF276Q8N554 614 aa23.64■■□□□ 1.37
CLN3-215ENST00000565236 IL17RCQ8NAC3 791 aa23.64■■□□□ 1.37
CLN3-215ENST00000565236 TXNDC5Q8NBS9 432 aaKnown RBP23.64■■□□□ 1.37
CLN3-215ENST00000565236 CEP63Q96MT8 703 aa23.64■■□□□ 1.37
CLN3-215ENST00000565236 CDK5RAP1Q96SZ6 601 aaKnown RBP23.64■■□□□ 1.37
CLN3-215ENST00000565236 CLIC5Q9NZA1 410 aa23.64■■□□□ 1.37
CLN3-215ENST00000565236 ELF2Q15723 593 aa23.63■■□□□ 1.37
CLN3-215ENST00000565236 PLK5Q496M5 336 aa23.63■■□□□ 1.37
CLN3-215ENST00000565236 USP39Q53GS9 565 aaKnown RBP23.63■■□□□ 1.37
CLN3-215ENST00000565236 EOGTQ5NDL2 527 aa23.63■■□□□ 1.37
CLN3-215ENST00000565236 ANO7Q6IWH7 933 aa23.63■■□□□ 1.37
CLN3-215ENST00000565236 PIGZQ86VD9 579 aa23.63■■□□□ 1.37
CLN3-215ENST00000565236 TTC30AQ86WT1 665 aa23.63■■□□□ 1.37
CLN3-215ENST00000565236 PHTF2Q8N3S3 785 aa23.63■■□□□ 1.37
CLN3-215ENST00000565236 RTKNQ9BST9 563 aa23.63■■□□□ 1.37
CLN3-215ENST00000565236 WDR35Q9P2L0 1181 aa23.63■■□□□ 1.37
CLN3-215ENST00000565236 LOC105378220A0A1B0GUY1 285 aaPredicted RBP23.62■■□□□ 1.37
CLN3-215ENST00000565236 DCLK1O15075 740 aa23.62■■□□□ 1.37
CLN3-215ENST00000565236 GADD45BO75293 160 aaPredicted RBP23.62■■□□□ 1.37
CLN3-215ENST00000565236 ALDH1A2O94788 518 aa23.62■■□□□ 1.37
CLN3-215ENST00000565236 RHOBTB1O94844 696 aa23.62■■□□□ 1.37
CLN3-215ENST00000565236 EPN2O95208 641 aa23.62■■□□□ 1.37
CLN3-215ENST00000565236 TBXAS1P24557 533 aaPredicted RBP23.62■■□□□ 1.37
CLN3-215ENST00000565236 KIR2DL1P43626 348 aaPredicted RBP23.62■■□□□ 1.37
CLN3-215ENST00000565236 FMO5P49326 533 aa23.62■■□□□ 1.37
CLN3-215ENST00000565236 SGO2Q562F6 1265 aa23.62■■□□□ 1.37
CLN3-215ENST00000565236 TMEM92Q6UXU6 159 aa23.62■■□□□ 1.37
CLN3-215ENST00000565236 TPGS1Q6ZTW0 290 aa23.62■■□□□ 1.37
CLN3-215ENST00000565236 MIB1Q86YT6 1006 aa23.62■■□□□ 1.37
CLN3-215ENST00000565236 ARHGAP18Q8N392 663 aa23.62■■□□□ 1.37
CLN3-215ENST00000565236 NETO1Q8TDF5 533 aa23.62■■□□□ 1.37
CLN3-215ENST00000565236 XPO6Q96QU8 1125 aaKnown RBP23.62■■□□□ 1.37
CLN3-215ENST00000565236 BBS2Q9BXC9 721 aa23.62■■□□□ 1.37
CLN3-215ENST00000565236 TPSD1Q9BZJ3 242 aa23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms