RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 EEF2KMTQ96G04 330 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 TMEM74BQ9NUR3 256 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 TRAF3IP3Q9Y228 551 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 DSPP15924 2871 aaKnown RBP20.1■□□□□ 0.81
VPS35-202ENST00000561713 LAMA5O15230 3695 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 NBEAQ8NFP9 2946 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 BAHCC1Q9P281 2608 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 ATRXP46100 2492 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 MAP3K13O43283 966 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 ALDH1A2O94788 518 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 MYL1P05976 194 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 P4HA1P13674 534 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 CD58P19256 250 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 P2RY2P41231 377 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 PTGER3P43115 390 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 PPP3CCP48454 512 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 LPCAT2Q7L5N7 544 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 FAM186BQ8IYM0 893 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 PDZD8Q8NEN9 1154 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 GATA6Q92908 595 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 CCDC47Q96A33 483 aaKnown RBP20.09■□□□□ 0.81
VPS35-202ENST00000561713 PNKPQ96T60 521 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 EVLQ9UI08 416 aaPredicted RBP20.09■□□□□ 0.81
VPS35-202ENST00000561713 MBD1Q9UIS9 605 aaPredicted RBP20.09■□□□□ 0.81
VPS35-202ENST00000561713 FREM2Q5SZK8 3169 aa20.09■□□□□ 0.81
VPS35-202ENST00000561713 TNRC6BQ9UPQ9 1833 aaKnown RBP20.09■□□□□ 0.81
VPS35-202ENST00000561713 KAT7O95251 611 aa20.08■□□□□ 0.81
VPS35-202ENST00000561713 MAPK8P45983 427 aa20.08■□□□□ 0.81
VPS35-202ENST00000561713 SGSM1Q2NKQ1 1148 aa20.08■□□□□ 0.81
VPS35-202ENST00000561713 HECTD3Q5T447 861 aa20.08■□□□□ 0.81
VPS35-202ENST00000561713 KIAA1211LQ6NV74 962 aa20.08■□□□□ 0.81
VPS35-202ENST00000561713 RHBDF2Q6PJF5 856 aa20.08■□□□□ 0.81
VPS35-202ENST00000561713 TMEM174Q8WUU8 243 aa20.08■□□□□ 0.81
VPS35-202ENST00000561713 CEP192Q8TEP8 1941 aa20.08■□□□□ 0.8
VPS35-202ENST00000561713 PLXND1Q9Y4D7 1925 aa20.08■□□□□ 0.8
VPS35-202ENST00000561713 A0A1W2PQ27 194 aa20.07■□□□□ 0.8
VPS35-202ENST00000561713 A0A1W2PQ64 194 aa20.07■□□□□ 0.8
VPS35-202ENST00000561713 A0A1W2PQD8 194 aa20.07■□□□□ 0.8
VPS35-202ENST00000561713 CYP26A1O43174 497 aa20.07■□□□□ 0.8
VPS35-202ENST00000561713 ADAM23O75077 832 aa20.07■□□□□ 0.8
VPS35-202ENST00000561713 ADH5P11766 374 aa20.07■□□□□ 0.8
VPS35-202ENST00000561713 KIR2DL1P43626 348 aaPredicted RBP20.07■□□□□ 0.8
VPS35-202ENST00000561713 LMAN2Q12907 356 aa20.07■□□□□ 0.8
VPS35-202ENST00000561713 LY6G5CQ5SRR4 150 aa20.07■□□□□ 0.8
VPS35-202ENST00000561713 SYT12Q8IV01 421 aa20.07■□□□□ 0.8
VPS35-202ENST00000561713 BBS7Q8IWZ6 715 aa20.07■□□□□ 0.8
VPS35-202ENST00000561713 WHAMMQ8TF30 809 aa20.07■□□□□ 0.8
VPS35-202ENST00000561713 HMGB4Q8WW32 186 aa20.07■□□□□ 0.8
VPS35-202ENST00000561713 SPACA7Q96KW9 195 aa20.07■□□□□ 0.8
VPS35-202ENST00000561713 NUSAP1Q9BXS6 441 aaKnown RBP20.07■□□□□ 0.8
VPS35-202ENST00000561713 NACA2Q9H009 215 aa20.07■□□□□ 0.8
VPS35-202ENST00000561713 POLMQ9NP87 494 aaPredicted RBP20.07■□□□□ 0.8
VPS35-202ENST00000561713 BCCIPQ9P287 314 aaKnown RBP eCLIP20.07■□□□□ 0.8
VPS35-202ENST00000561713 ASCC3Q8N3C0 2202 aaKnown RBP20.07■□□□□ 0.8
VPS35-202ENST00000561713 ATXN2Q99700 1313 aaKnown RBP20.06■□□□□ 0.8
VPS35-202ENST00000561713 A0A0A0MRY4 1105 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 SLC9A3R1O14745 358 aaPredicted RBP20.06■□□□□ 0.8
VPS35-202ENST00000561713 ZNF202O95125 648 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 ADH1CP00326 375 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 APODP05090 189 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 FAM200BP0CF97 657 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 HOXB3P14651 431 aaPredicted RBP20.06■□□□□ 0.8
VPS35-202ENST00000561713 ENGP17813 658 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 INCA1Q0VD86 236 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 PNOCQ13519 176 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 COL9A2Q14055 689 aaPredicted RBP20.06■□□□□ 0.8
VPS35-202ENST00000561713 MAP7D1Q3KQU3 841 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 ZCWPW2Q504Y3 356 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 CLEC20AQ6ZU45 233 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 DDX42Q86XP3 938 aaKnown RBP eCLIP20.06■□□□□ 0.8
VPS35-202ENST00000561713 GUF1Q8N442 669 aaKnown RBP20.06■□□□□ 0.8
VPS35-202ENST00000561713 KIAA1958Q8N8K9 716 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 OVCA2Q8WZ82 227 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 TAF4BQ92750 862 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 IMPG2Q9BZV3 1241 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 NIF3L1Q9GZT8 377 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 SCAND2PQ9GZW5 306 aaPredicted RBP20.06■□□□□ 0.8
VPS35-202ENST00000561713 ARHGEF4Q9NR80 690 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 SH3BP1Q9Y3L3 701 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 GON4LQ3T8J9 2241 aa20.06■□□□□ 0.8
VPS35-202ENST00000561713 TMEM8BA6NDV4 472 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 SRRM3A6NNA2 597 aaPredicted RBP20.05■□□□□ 0.8
VPS35-202ENST00000561713 IKBKBO14920 756 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 MDM4O15151 490 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 HYAL3O43820 417 aaPredicted RBP20.05■□□□□ 0.8
VPS35-202ENST00000561713 TLR5O60602 858 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 TBX18O95935 607 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 ZDHHC11BP0C7U3 371 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 KRT13P13646 458 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 EIF2DP41214 584 aaKnown RBP20.05■□□□□ 0.8
VPS35-202ENST00000561713 GRIA2P42262 883 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 HSF5Q4G112 596 aaPredicted RBP20.05■□□□□ 0.8
VPS35-202ENST00000561713 EOGTQ5NDL2 527 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 INTS8Q75QN2 995 aaKnown RBP20.05■□□□□ 0.8
VPS35-202ENST00000561713 CRYBG2Q8N1P7 616 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 PGBD3Q8N328 593 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 NAT16Q8N8M0 369 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 ERCC4Q92889 916 aaPredicted RBP20.05■□□□□ 0.8
VPS35-202ENST00000561713 FSCN3Q9NQT6 498 aa20.05■□□□□ 0.8
VPS35-202ENST00000561713 OSER1Q9NX31 292 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms