RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 NR1I3Q14994 352 aa14.92□□□□□ -0.02
SHMT2-217ENST00000555116 FBXL6Q8N531 539 aa14.92□□□□□ -0.02
SHMT2-217ENST00000555116 DDX1Q92499 740 aaKnown RBP14.92□□□□□ -0.02
SHMT2-217ENST00000555116 DDX23Q9BUQ8 820 aaKnown RBP14.92□□□□□ -0.02
SHMT2-217ENST00000555116 LHX5Q9H2C1 402 aa14.92□□□□□ -0.02
SHMT2-217ENST00000555116 HPS4Q9NQG7 708 aa14.92□□□□□ -0.02
SHMT2-217ENST00000555116 NUDT5Q9UKK9 219 aa14.92□□□□□ -0.02
SHMT2-217ENST00000555116 A0A1W2PQC6 194 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 YJEFN3A6XGL0 299 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 E7ENQ6 273 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 MDM4O15151 490 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 GFPT2O94808 682 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 RALAP11233 206 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 ATP5C1P36542 298 aaKnown RBP14.91□□□□□ -0.02
SHMT2-217ENST00000555116 PRKCQQ04759 706 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 TNK2Q07912 1038 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 CWF19L1Q69YN2 538 aaKnown RBP14.91□□□□□ -0.02
SHMT2-217ENST00000555116 TRIM68Q6AZZ1 485 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 CC2D1AQ6P1N0 951 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-217ENST00000555116 NOP9Q86U38 636 aaKnown RBP14.91□□□□□ -0.02
SHMT2-217ENST00000555116 PASD1Q8IV76 773 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 KIAA1958Q8N8K9 716 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 IRGQQ8WZA9 623 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 WBP2Q969T9 261 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 KLF16Q9BXK1 252 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-217ENST00000555116 TBC1D17Q9HA65 648 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 CFAP97Q9P2B7 532 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 WNT6Q9Y6F9 365 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 ARSAP15289 507 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 KRT9P35527 623 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 STAT1P42224 750 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 ACADSBP45954 432 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 PDCLQ13371 301 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 PDGFRLQ15198 375 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 C10orf120Q5SQS8 335 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 TMEM110Q86TL2 294 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 DDX42Q86XP3 938 aaKnown RBP eCLIP14.91□□□□□ -0.02
SHMT2-217ENST00000555116 TTC16Q8NEE8 873 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 CSGALNACT1Q8TDX6 532 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 EPS8L1Q8TE68 723 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 CLEC4CQ8WTT0 213 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 OSCP1Q8WVF1 389 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 SHDQ96IW2 340 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 SPAG5Q96R06 1193 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 NACA2Q9H009 215 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 ST7Q9NRC1 585 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 DUS2Q9NX74 493 aaKnown RBP14.91□□□□□ -0.02
SHMT2-217ENST00000555116 GTSE1Q9NYZ3 720 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 DNMT3LQ9UJW3 386 aa14.91□□□□□ -0.02
SHMT2-217ENST00000555116 NOCTQ9UK39 431 aaKnown RBP14.91□□□□□ -0.02
SHMT2-217ENST00000555116 ZNF500O60304 480 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-217ENST00000555116 FBXO21O94952 628 aa14.9□□□□□ -0.02
SHMT2-217ENST00000555116 CDH5P33151 784 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-217ENST00000555116 MLLT6P55198 1093 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-217ENST00000555116 EML3Q32P44 896 aa14.9□□□□□ -0.02
SHMT2-217ENST00000555116 BSPRYQ5W0U4 402 aa14.9□□□□□ -0.02
SHMT2-217ENST00000555116 TPRG1Q6ZUI0 275 aa14.9□□□□□ -0.02
SHMT2-217ENST00000555116 SCUBE3Q8IX30 993 aa14.9□□□□□ -0.02
SHMT2-217ENST00000555116 FLCNQ8NFG4 579 aa14.9□□□□□ -0.02
SHMT2-217ENST00000555116 CDK5RAP1Q96SZ6 601 aaKnown RBP14.9□□□□□ -0.02
SHMT2-217ENST00000555116 MIS12Q9H081 205 aa14.9□□□□□ -0.02
SHMT2-217ENST00000555116 LINC00597Q9H2U6 94 aa14.9□□□□□ -0.02
SHMT2-217ENST00000555116 MFSD1Q9H3U5 465 aa14.9□□□□□ -0.02
SHMT2-217ENST00000555116 EBF3Q9H4W6 596 aa14.9□□□□□ -0.02
SHMT2-217ENST00000555116 TJP2Q9UDY2 1190 aa14.9□□□□□ -0.02
SHMT2-217ENST00000555116 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.9□□□□□ -0.023e-7■■□□□ 13.1
SHMT2-217ENST00000555116 OTOL1A6NHN0 477 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-217ENST00000555116 E5RJQ4 531 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 PAPSS1O43252 624 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-217ENST00000555116 GLULP15104 373 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 SOX9P48436 509 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 IFNAR2P48551 515 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 ZNF75DP51815 510 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 RUNX3Q13761 415 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 ITPRIPL2Q3MIP1 535 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 TAF3Q5VWG9 929 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 BTBD8Q5XKL5 378 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 TADA2BQ86TJ2 420 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 C1orf131Q8NDD1 294 aaKnown RBP14.89□□□□□ -0.03
SHMT2-217ENST00000555116 TTC8Q8TAM2 541 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 SLC20A1Q8WUM9 679 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 BAP1Q92560 729 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 CPXM1Q96SM3 734 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 PIAS3Q9Y6X2 628 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 E2F8A0AVK6 867 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 SCAMP3O14828 347 aaKnown RBP14.89□□□□□ -0.03
SHMT2-217ENST00000555116 GREM1O60565 184 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 MMEP08473 750 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 CHRNB2P17787 502 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 PBX1P40424 430 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 CLCN5P51795 746 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 VCPP55072 806 aaKnown RBP14.89□□□□□ -0.03
SHMT2-217ENST00000555116 UBASH3AP57075 661 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 ASTLQ6HA08 431 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-217ENST00000555116 SARM1Q6SZW1 724 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 EDEM1Q92611 657 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 PPP1R13BQ96KQ4 1090 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 FOXQ1Q9C009 403 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 TRIM5Q9C035 493 aa14.89□□□□□ -0.03
SHMT2-217ENST00000555116 C8orf33Q9H7E9 229 aaPredicted RBP14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms