RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 OTUB2Q96DC9 234 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 SPATA32Q96LK8 384 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 ACOX2Q99424 681 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 KLF16Q9BXK1 252 aaPredicted RBP12.12□□□□□ -0.47
NEK3-204ENST00000552973 FBXO44Q9H4M3 255 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 NMUR1Q9HB89 426 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 CSNK1G1Q9HCP0 422 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 TLR8Q9NR97 1041 aaKnown RBP12.12□□□□□ -0.47
NEK3-204ENST00000552973 TMEM74BQ9NUR3 256 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 HCN2Q9UL51 889 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 HPSEQ9Y251 543 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 SDK1Q7Z5N4 2213 aa12.12□□□□□ -0.47
NEK3-204ENST00000552973 ATXN2Q99700 1313 aaKnown RBP12.11□□□□□ -0.47
NEK3-204ENST00000552973 DENND4CQ5VZ89 1909 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 ZNF638Q14966 1978 aaKnown RBP12.11□□□□□ -0.47
NEK3-204ENST00000552973 A0A1W2PQH9 124 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 HHLA1C9JL84 531 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 NEDD8-MDP1E9PL57 170 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 CDX4O14627 284 aaPredicted RBP12.11□□□□□ -0.47
NEK3-204ENST00000552973 IKBKBO14920 756 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 HOXC11O43248 304 aaPredicted RBP12.11□□□□□ -0.47
NEK3-204ENST00000552973 GREM1O60565 184 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 NR2F2P24468 414 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 ATP5C1P36542 298 aaKnown RBP12.11□□□□□ -0.47
NEK3-204ENST00000552973 SYKP43405 635 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 NDUFA8P51970 172 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 PPP3CAQ08209 521 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 MAP7D1Q3KQU3 841 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 HSF5Q4G112 596 aaPredicted RBP12.11□□□□□ -0.47
NEK3-204ENST00000552973 TRIM61Q5EBN2 209 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 GRAMD4Q6IC98 578 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 TOGARAM2Q6ZUX3 1019 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 HTR3DQ70Z44 454 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 TMEM174Q8WUU8 243 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 TAF4BQ92750 862 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 SPACA7Q96KW9 195 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 HNRNPABQ99729 332 aaKnown RBP12.11□□□□□ -0.47
NEK3-204ENST00000552973 BBS2Q9BXC9 721 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 NT5C1AQ9BXI3 368 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 TMEM9BQ9NQ34 198 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 FSCN3Q9NQT6 498 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 DNAJC17Q9NVM6 304 aaKnown RBP12.11□□□□□ -0.47
NEK3-204ENST00000552973 TRAF3IP3Q9Y228 551 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 ZDHHC9Q9Y397 364 aa12.11□□□□□ -0.47
NEK3-204ENST00000552973 RARGP13631 454 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 KRT13P13646 458 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 HOXB2P14652 356 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 TYRP14679 529 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 GABRG2P18507 467 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 MAPK8P45983 427 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 KRT85P78386 507 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 ADAM9Q13443 819 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 SH3PXD2AQ5TCZ1 1133 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 EGFLAMQ63HQ2 1017 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 FAM186BQ8IYM0 893 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 CHPFQ8IZ52 775 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 TERB1Q8NA31 727 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 CCDC47Q96A33 483 aaKnown RBP12.1□□□□□ -0.47
NEK3-204ENST00000552973 EEF2KMTQ96G04 330 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 XPO6Q96QU8 1125 aaKnown RBP12.1□□□□□ -0.47
NEK3-204ENST00000552973 IMPG2Q9BZV3 1241 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 PLK2Q9NYY3 685 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 USP25Q9UHP3 1055 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 NAGPAQ9UK23 515 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 LSM7Q9UK45 103 aaKnown RBP12.1□□□□□ -0.47
NEK3-204ENST00000552973 SCML2Q9UQR0 700 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 RAD54BQ9Y620 910 aa12.1□□□□□ -0.47
NEK3-204ENST00000552973 ANAPC1Q9H1A4 1944 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 A0A1W2PQF6 199 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 PRRT4C9JH25 899 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 CILPO75339 1184 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 RHOBTB3O94955 611 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 TOP3BO95985 862 aaKnown RBP12.09□□□□□ -0.47
NEK3-204ENST00000552973 MYL1P05976 194 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 HMBSP08397 361 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 TRIM21P19474 475 aaKnown RBP12.09□□□□□ -0.47
NEK3-204ENST00000552973 SPINK2P20155 84 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 ITPKAP23677 461 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 NTSR1P30989 418 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 PSMC2P35998 433 aaKnown RBP12.09□□□□□ -0.47
NEK3-204ENST00000552973 RPL6Q02878 288 aaKnown RBP12.09□□□□□ -0.47
NEK3-204ENST00000552973 GOLGA8FQ08AF8 430 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 GOLGA8DPQ0D2H9 430 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 ZNF252P-AS1Q0IIN9 211 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 INCA1Q0VD86 236 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 DPYDQ12882 1025 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 FOXC1Q12948 553 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 BYSLQ13895 437 aaKnown RBP12.09□□□□□ -0.47
NEK3-204ENST00000552973 PREPLQ4J6C6 727 aaPredicted RBP12.09□□□□□ -0.47
NEK3-204ENST00000552973 C10orf120Q5SQS8 335 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 PPP1R26Q5T8A7 1209 aaPredicted RBP12.09□□□□□ -0.47
NEK3-204ENST00000552973 LYSMD4Q5XG99 296 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 KIAA1211LQ6NV74 962 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 NUDT18Q6ZVK8 323 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 INTS8Q75QN2 995 aaKnown RBP12.09□□□□□ -0.47
NEK3-204ENST00000552973 TRMT11Q7Z4G4 463 aaKnown RBP12.09□□□□□ -0.47
NEK3-204ENST00000552973 SCD5Q86SK9 330 aa12.09□□□□□ -0.47
NEK3-204ENST00000552973 HEXIM2Q96MH2 286 aaKnown RBP12.09□□□□□ -0.47
NEK3-204ENST00000552973 NUSAP1Q9BXS6 441 aaKnown RBP12.09□□□□□ -0.47
NEK3-204ENST00000552973 SLC6A17Q9H1V8 727 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms