RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ANO5Q75V66 913 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 MAP4K3Q8IVH8 894 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 ADGRF2Q8IZF7 708 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 JOSD2Q8TAC2 188 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 TFB1MQ8WVM0 346 aaKnown RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 E2F7Q96AV8 911 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 TMIGD2Q96BF3 282 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 GMCL1Q96IK5 515 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 FBXL18Q96ME1 805 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 ZNF512Q96ME7 567 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 FOXP3Q9BZS1 431 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 ZDHHC7Q9NXF8 308 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 KCND2Q9NZV8 630 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PCSK1NQ9UHG2 260 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 SERPINA10Q9UK55 444 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 POMPQ9Y244 141 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 DRG1Q9Y295 367 aaKnown RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PPME1Q9Y570 386 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PCDHB4Q9Y5E5 795 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 TEX264Q9Y6I9 313 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 MYO18AQ92614 2054 aaKnown RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 F5H423 210 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PDLIM1O00151 329 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 DNAJA2O60884 412 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 CST3P01034 146 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 INHBAP08476 426 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PIM1P11309 404 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PMLP29590 882 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 SERPINB6P35237 376 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 GRIA1P42261 906 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 CHN2P52757 468 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 CDKL1Q00532 357 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 ORC1Q13415 861 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 SNAPC2Q13487 334 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 BRDTQ58F21 947 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PGM2L1Q6PCE3 622 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 CEP128Q6ZU80 1094 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 ZBTB33Q86T24 672 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 ARHGAP18Q8N392 663 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 MPP5Q8N3R9 675 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 RNF148Q8N7C7 305 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 STKLD1Q8NE28 680 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 TMEM174Q8WUU8 243 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 GAB3Q8WWW8 586 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 ZNF606Q8WXB4 792 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 TFAP2BQ92481 460 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 MXRA8Q9BRK3 442 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 TUBB6Q9BUF5 446 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PNPOQ9NVS9 261 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PIH1D1Q9NWS0 290 aaKnown RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 IL1RAPL1Q9NZN1 696 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 SIRPGQ9P1W8 387 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 CYTH4Q9UIA0 394 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 HERC5Q9UII4 1024 aaKnown RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 CDH22Q9UJ99 828 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 BLOC1S6Q9UL45 172 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 TMCO1Q9UM00 188 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 SOX13Q9UN79 622 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 POLIQ9UNA4 740 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 TTLL3Q9Y4R7 772 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PCDHGA4Q9Y5G9 962 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 BOLA2-SMG1P6H3BVE0 249 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 PIK3R2O00459 728 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 ATP2A1O14983 1001 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 SIN3BO75182 1162 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 COQ9O75208 318 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 SNNO75324 88 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 LRCH4O75427 683 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 C4BPAP04003 597 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 RPL10AP62906 217 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 LMNB2Q03252 620 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 EN1Q05925 392 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 BAATQ14032 418 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 DPYSL3Q14195 570 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 HIC1Q14526 733 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 ZRSR2Q15696 482 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 KLHL38Q2WGJ6 581 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 ANKRD20A4Q4UJ75 823 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 C6orf52Q5T4I8 152 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 KYAT3Q6YP21 454 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 PHF13Q86YI8 300 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 MCF2L2Q86YR7 1114 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 NUDCD3Q8IVD9 361 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 DEFB107AQ8IZN7 70 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 GMCL1P1Q8NEA9 526 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 DEPTORQ8TB45 409 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 VTI1AQ96AJ9 217 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 TMEM143Q96AN5 459 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 FAM81BQ96LP2 452 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 CNBD2Q96M20 576 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 C7orf26Q96N11 449 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 PARVAQ9NVD7 372 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 LZTS1Q9Y250 596 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 ZBTB14O43829 449 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 PEX1O43933 1283 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 ENTPD3O75355 529 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 MAPTP10636 758 aaKnown RBP5.03□□□□□ -1.6
LIMA1-214ENST00000552783 ITGAXP20702 1163 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 PHBP35232 272 aa5.03□□□□□ -1.6
LIMA1-214ENST00000552783 STT3AP46977 705 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms