RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 SIGLEC16A6NMB1 481 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 AIM2O14862 343 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 ARF4P18085 180 aaPredicted RBP16.84■□□□□ 0.29
CUX1-213ENST00000549414 ASTE1Q2TB18 679 aaPredicted RBP16.84■□□□□ 0.29
CUX1-213ENST00000549414 TMTC4Q5T4D3 741 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 MTDHQ86UE4 582 aaKnown RBP16.84■□□□□ 0.29
CUX1-213ENST00000549414 MREGQ8N565 214 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 OSBPL1AQ9BXW6 950 aa16.84■□□□□ 0.29
CUX1-213ENST00000549414 SDK1Q7Z5N4 2213 aa16.83■□□□□ 0.29
CUX1-213ENST00000549414 SLC6A3Q01959 620 aa16.83■□□□□ 0.29
CUX1-213ENST00000549414 HIC1Q14526 733 aa16.83■□□□□ 0.29
CUX1-213ENST00000549414 FGD4Q96M96 766 aa16.83■□□□□ 0.29
CUX1-213ENST00000549414 RPRD1AQ96P16 312 aaPredicted RBP16.83■□□□□ 0.29
CUX1-213ENST00000549414 FRMD8Q9BZ67 464 aaPredicted RBP16.83■□□□□ 0.29
CUX1-213ENST00000549414 LRRC19Q9H756 370 aa16.83■□□□□ 0.29
CUX1-213ENST00000549414 APOC4-APOC2K7ER74 178 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 PRRG1O14668 218 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 OPLAHO14841 1288 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 FSCN2O14926 492 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 LIASO43766 372 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 APOC2P02655 101 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 MYL2P10916 166 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 NAPEPLDQ6IQ20 393 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 FAM183BPQ6ZVS7 135 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 UPF3AQ9H1J1 476 aaKnown RBP16.83■□□□□ 0.28
CUX1-213ENST00000549414 NOD2Q9HC29 1040 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 NDFIP2Q9NV92 336 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 SLC24A2Q9UI40 661 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 PRDM4Q9UKN5 801 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 NFKBIEO00221 500 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 NVLO15381 856 aaKnown RBP16.83■□□□□ 0.28
CUX1-213ENST00000549414 ADRA1DP25100 572 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 RPL10AP62906 217 aaKnown RBP16.83■□□□□ 0.28
CUX1-213ENST00000549414 KRT80Q6KB66 452 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 CXCL17Q6UXB2 119 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 DEFB128Q7Z7B8 93 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 LCA5Q86VQ0 697 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 EGFL8Q99944 293 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 SYT17Q9BSW7 474 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 FRMD8P1Q9BZ68 369 aaPredicted RBP16.83■□□□□ 0.28
CUX1-213ENST00000549414 RNPEPQ9H4A4 650 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 CATSPERBQ9H7T0 1116 aa16.83■□□□□ 0.28
CUX1-213ENST00000549414 MTO1Q9Y2Z2 717 aaKnown RBP16.83■□□□□ 0.28
CUX1-213ENST00000549414 GNGT2O14610 69 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 HOXD13P35453 343 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 FDFT1P37268 417 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 CRADDP78560 199 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 GOLGA8TH3BQL2 631 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 GPR182O15218 404 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 USP2O75604 605 aaPredicted RBP16.82■□□□□ 0.28
CUX1-213ENST00000549414 SETSIPP0DME0 302 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 ABCG1P45844 678 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 FAAP100Q0VG06 881 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 CNGA2Q16280 664 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 UGP2Q16851 508 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 ANO4Q32M45 955 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 PTPN20Q4JDL3 420 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 PHF13Q86YI8 300 aaPredicted RBP16.82■□□□□ 0.28
CUX1-213ENST00000549414 DCP1BQ8IZD4 617 aaKnown RBP16.82■□□□□ 0.28
CUX1-213ENST00000549414 ZCCHC9Q8N567 271 aaKnown RBP16.82■□□□□ 0.28
CUX1-213ENST00000549414 SDCCAG3Q96C92 435 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 PGLYRP2Q96PD5 576 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 GPR20Q99678 358 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 TRIM17Q9Y577 477 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 ATRNL1Q5VV63 1379 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 CNTNAP2Q9UHC6 1331 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 FOXO6A8MYZ6 492 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 TCN1P20061 433 aaPredicted RBP16.82■□□□□ 0.28
CUX1-213ENST00000549414 PSEN2P49810 448 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 MAP7Q14244 749 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 ZC3H12AQ5D1E8 599 aaKnown RBP16.82■□□□□ 0.28
CUX1-213ENST00000549414 TMCO4Q5TGY1 634 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 ELMSAN1Q6PJG2 1045 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 TMA16Q96EY4 203 aaKnown RBP16.82■□□□□ 0.28
CUX1-213ENST00000549414 ASIC4Q96FT7 647 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 DCDC2CA8MYV0 355 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 RPL22P35268 128 aaKnown RBP16.82■□□□□ 0.28
CUX1-213ENST00000549414 AP2B1P63010 937 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 DPYSL3Q14195 570 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 LRRC43Q8N309 656 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 MTBPQ96DY7 904 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 ATXN3LQ9H3M9 355 aa16.82■□□□□ 0.28
CUX1-213ENST00000549414 TTC27Q6P3X3 843 aa16.81■□□□□ 0.28
CUX1-213ENST00000549414 EIF1ADQ8N9N8 165 aaKnown RBP16.81■□□□□ 0.28
CUX1-213ENST00000549414 KAT2BQ92831 832 aa16.81■□□□□ 0.28
CUX1-213ENST00000549414 IARS2Q9NSE4 1012 aaKnown RBP16.81■□□□□ 0.28
CUX1-213ENST00000549414 PPME1Q9Y570 386 aa16.81■□□□□ 0.28
CUX1-213ENST00000549414 EFEMP1Q12805 493 aa16.81■□□□□ 0.28
CUX1-213ENST00000549414 EFTUD2Q15029 972 aaKnown RBP eCLIP16.81■□□□□ 0.28
CUX1-213ENST00000549414 KBTBD12Q3ZCT8 623 aa16.81■□□□□ 0.28
CUX1-213ENST00000549414 WSCD1Q658N2 575 aa16.81■□□□□ 0.28
CUX1-213ENST00000549414 DHX33Q9H6R0 707 aaKnown RBP16.81■□□□□ 0.28
CUX1-213ENST00000549414 C4BPAP04003 597 aaKnown RBP16.81■□□□□ 0.28
CUX1-213ENST00000549414 TWF1Q12792 350 aa16.81■□□□□ 0.28
CUX1-213ENST00000549414 PLPPR4Q7Z2D5 763 aa16.81■□□□□ 0.28
CUX1-213ENST00000549414 STRA8Q7Z7C7 330 aa16.81■□□□□ 0.28
CUX1-213ENST00000549414 ULBP1Q9BZM6 244 aa16.81■□□□□ 0.28
CUX1-213ENST00000549414 ZC3H4Q9UPT8 1303 aaKnown RBP16.81■□□□□ 0.28
CUX1-213ENST00000549414 WDR27A2RRH5 827 aa16.8■□□□□ 0.28
CUX1-213ENST00000549414 NQO1P15559 274 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms