RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 NPTXRO95502 500 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 ADRB2P07550 413 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 POU2F2P09086 479 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 CLTAP09496 248 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 TMEM191BP0C7N4 346 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 PSMC3P17980 439 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 TBXAS1P24557 533 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 SOX5P35711 763 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 PRKCIP41743 596 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 PIK3CAP42336 1068 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 KIF11P52732 1056 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 ARPP19P56211 112 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 BPIFB4P59827 614 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 YWHAEP62258 255 aaKnown RBP7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 ETF1P62495 437 aaKnown RBP7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 CREB5Q02930 508 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 MBTD1Q05BQ5 628 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 TRPC3Q13507 836 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 DUOXA2Q1HG44 320 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 CBWD6Q4V339 395 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 CBWD3Q5JTY5 395 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 CBWD5Q5RIA9 395 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 DAB2IPQ5VWQ8 1189 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 SLC39A4Q6P5W5 647 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 RAD9BQ6WBX8 426 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 TOGARAM2Q6ZUX3 1019 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 PDZD4Q76G19 769 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 NT5DC4Q86YG4 428 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 WDR49Q8IV35 697 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 YAF2Q8IY57 180 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 GPR65Q8IYL9 337 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 CCDC116Q8IYX3 515 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 VWA5B2Q8N398 1253 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 C17orf53Q8N3J3 647 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 GAB3Q8WWW8 586 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 SMARCD2Q92925 531 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 JAKMIP2Q96AA8 810 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 CALR3Q96L12 384 aaKnown RBP7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 TSPAN18Q96SJ8 248 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 CHP1Q99653 195 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 CGRRF1Q99675 332 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 CCDC94Q9BW85 323 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 DNAI2Q9GZS0 605 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 IKZF4Q9H2S9 585 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 UBE2TQ9NPD8 197 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 ENAMQ9NRM1 1142 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 VPS45Q9NRW7 570 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 MAP10Q9P2G4 905 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 GIT1Q9Y2X7 761 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 COQ4Q9Y3A0 265 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 NCANO14594 1321 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 WDR27A2RRH5 827 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 EIF4E1BA6NMX2 242 aaKnown RBP7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 SPINT1O43278 529 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 XPOTO43592 962 aaKnown RBP7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 TACC1O75410 805 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 PAPSS2O95340 614 aaPredicted RBP7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 P4HA1P13674 534 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 GJA1P17302 382 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 TNFAIP3P21580 790 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 PROZP22891 400 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 EIF4A3P38919 411 aaKnown RBP7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 CCR2P41597 374 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 MAGEA1P43355 309 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 ACOT2P49753 483 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 VAV2P52735 878 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 TERF1P54274 439 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 YARSP54577 528 aaKnown RBP7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 GNG11P61952 73 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 CLDN10P78369 228 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 ARID5AQ03989 594 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 PPP3CAQ08209 521 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 TUSC3Q13454 348 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 DRAP1Q14919 205 aaPredicted RBP7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 PON2Q15165 354 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 ARHGAP44Q17R89 818 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 UAP1L1Q3KQV9 507 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 ZACNQ401N2 412 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 CCDC122Q5T0U0 273 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 IQCEQ6IPM2 695 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 PPP1R2P3Q6NXS1 205 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 WDR59Q6PJI9 974 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 TXNDC11Q6PKC3 985 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 REXO1L1PQ8IX06 675 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 PPM1KQ8N3J5 372 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 DEFB124Q8NES8 71 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 ZSCAN18Q8TBC5 510 aaPredicted RBP7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 DEPDC1BQ8WUY9 529 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 UBE2Q2Q8WVN8 375 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 FAXDC2Q96IV6 333 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 LOXL4Q96JB6 756 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 ZBTB45Q96K62 511 aaPredicted RBP7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 ZSWIM3Q96MP5 696 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 ASB16Q96NS5 453 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 ACAP3Q96P50 834 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 ALS2CR12Q96Q35 445 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 DESI2Q9BSY9 194 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 ASB7Q9H672 318 aa7.53□□□□□ -1.2
DEPDC4-208ENST00000549341 PGPEP1Q9NXJ5 209 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms