RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 GRAPLQ8TC17 118 aaPredicted RBP19.93■□□□□ 0.78
HDAC4-215ENST00000543185 EPB41L4BQ9H329 900 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 KLHL28Q9NXS3 571 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 AKAP7Q9P0M2 348 aaPredicted RBP19.93■□□□□ 0.78
HDAC4-215ENST00000543185 CLTBP09497 229 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 TPBGLP0DKB5 382 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 PSMB9P28065 219 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 KYAT3Q6YP21 454 aaKnown RBP19.93■□□□□ 0.78
HDAC4-215ENST00000543185 CENPTQ96BT3 561 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 PPP1R10Q96QC0 940 aaKnown RBP19.93■□□□□ 0.78
HDAC4-215ENST00000543185 PNKPQ96T60 521 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 CCDC162PA2VCL2 907 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 UBOX5O94941 541 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 VCLP18206 1134 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 FRG1Q14331 258 aaKnown RBP19.93■□□□□ 0.78
HDAC4-215ENST00000543185 XRRA1Q6P2D8 792 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 NUAK2Q9H093 628 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 UBE2QL1A1L167 161 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 FAM20BO75063 409 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 CORO2BQ9UQ03 480 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 MGAT4DA6NG13 374 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 H3BNX3 289 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 FIGNQ5HY92 759 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 TBCELQ5QJ74 424 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 KLHL24Q6TFL4 600 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 SQORQ9Y6N5 450 aa19.93■□□□□ 0.78
HDAC4-215ENST00000543185 NR5A2O00482 541 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 SERPIND1P05546 499 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 CLTCL1P53675 1640 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 XIAPP98170 497 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 ZNF57Q68EA5 555 aaPredicted RBP19.92■□□□□ 0.78
HDAC4-215ENST00000543185 NET1Q7Z628 596 aaPredicted RBP19.92■□□□□ 0.78
HDAC4-215ENST00000543185 CST8O60676 142 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 KCNB2Q92953 911 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 TTC30BQ8N4P2 665 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 RIN2Q8WYP3 895 aaPredicted RBP19.92■□□□□ 0.78
HDAC4-215ENST00000543185 NR1H2P55055 460 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 EPHA7Q15375 998 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 ATP6V1HQ9UI12 483 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 GSTM1P09488 218 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 IL5RAQ01344 420 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 NFYCQ13952 458 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 CENPIQ92674 756 aaPredicted RBP19.92■□□□□ 0.78
HDAC4-215ENST00000543185 CELF4Q9BZC1 486 aaKnown RBP19.92■□□□□ 0.78
HDAC4-215ENST00000543185 CORO1CQ9ULV4 474 aaPredicted RBP19.92■□□□□ 0.78
HDAC4-215ENST00000543185 TMCO1Q9UM00 188 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 ATP4AP20648 1035 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 INO80DQ53TQ3 878 aaPredicted RBP19.92■□□□□ 0.78
HDAC4-215ENST00000543185 NANOGNBQ7Z5D8 188 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 PAFAH2Q99487 392 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 KCNK4Q9NYG8 393 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 CCDC88CQ9P219 2028 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 CENPAP49450 140 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 ADCK2Q7Z695 626 aa19.92■□□□□ 0.78
HDAC4-215ENST00000543185 ATG7O95352 703 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 GH2P01242 217 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 FXR1P51114 621 aaKnown RBP eCLIP19.91■□□□□ 0.78
HDAC4-215ENST00000543185 VAC14Q08AM6 782 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 EPHX4Q8IUS5 362 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 OXER1Q8TDS5 423 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 CDK5RAP1Q96SZ6 601 aaKnown RBP19.91■□□□□ 0.78
HDAC4-215ENST00000543185 S100A6P06703 90 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 COMMD9Q9P000 198 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 CCDC88AQ3V6T2 1871 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 MNTQ99583 582 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 LRRC40Q9H9A6 602 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 CYLDQ9NQC7 956 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 METTL5Q9NRN9 209 aaKnown RBP19.91■□□□□ 0.78
HDAC4-215ENST00000543185 SLC25A13Q9UJS0 675 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 POLIQ9UNA4 740 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 IDH3BO43837 385 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 TNFRSF8P28908 595 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 FEN1P39748 380 aaKnown RBP19.91■□□□□ 0.78
HDAC4-215ENST00000543185 BICRALQ6AI39 1079 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 SIRT2Q8IXJ6 389 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 CDK20Q8IZL9 346 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 TMEM132CQ8N3T6 1108 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 IPMKQ8NFU5 416 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 REPS1Q96D71 796 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 FKBP14Q9NWM8 211 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 RPS6KB2Q9UBS0 482 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 HARS2P49590 506 aaKnown RBP19.91■□□□□ 0.78
HDAC4-215ENST00000543185 FXR2P51116 673 aaKnown RBP eCLIP19.91■□□□□ 0.787e-6■■□□□ 13.4
HDAC4-215ENST00000543185 EXOSC10Q01780 885 aaKnown RBP19.91■□□□□ 0.78
HDAC4-215ENST00000543185 CYB5R4Q7L1T6 521 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 ALOX12P18054 663 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 CDH3P22223 829 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 HPCAL1P37235 193 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.91■□□□□ 0.781e-6■■■□□ 16.2
HDAC4-215ENST00000543185 PALB2Q86YC2 1186 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 DCP1AQ9NPI6 582 aaPredicted RBP19.91■□□□□ 0.78
HDAC4-215ENST00000543185 ZDHHC9Q9Y397 364 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 NOS3P29474 1203 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 FAM98CQ17RN3 349 aaKnown RBP19.91■□□□□ 0.78
HDAC4-215ENST00000543185 MYDGFQ969H8 173 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 APOPT1Q96IL0 206 aa19.91■□□□□ 0.78
HDAC4-215ENST00000543185 CINPQ9BW66 212 aaPredicted RBP19.91■□□□□ 0.78
HDAC4-215ENST00000543185 DDX18Q9NVP1 670 aaKnown RBP19.91■□□□□ 0.78
HDAC4-215ENST00000543185 SPIRE1Q08AE8 756 aa19.9■□□□□ 0.78
HDAC4-215ENST00000543185 BROXQ5VW32 411 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms