RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SLC26A9Q7LBE3 791 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 OTOP3Q7RTS5 596 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 TADA2BQ86TJ2 420 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 LRRC8AQ8IWT6 810 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 NPAS3Q8IXF0 933 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 MAB21L3Q8N8X9 362 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 CCDC112Q8NEF3 446 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 PIWIL1Q96J94 861 aaKnown RBP17.94■□□□□ 0.46
LIG1-204ENST00000542460 ASB2Q96Q27 587 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 CDK5RAP1Q96SZ6 601 aaKnown RBP17.94■□□□□ 0.46
LIG1-204ENST00000542460 PHF7Q9BWX1 381 aaPredicted RBP17.94■□□□□ 0.46
LIG1-204ENST00000542460 SLC46A2Q9BY10 475 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 POPDC2Q9HBU9 364 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 SPTLC3Q9NUV7 552 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 EPN1Q9Y6I3 576 aaPredicted RBP17.94■□□□□ 0.46
LIG1-204ENST00000542460 MUC3AQ02505 3323 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 GREB1Q4ZG55 1949 aa17.94■□□□□ 0.46
LIG1-204ENST00000542460 C2orf78A6NCI8 922 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 SOWAHDA6NJG2 315 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 TLR5O60602 858 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 HSF2BPO75031 334 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 OAS1P00973 400 aaKnown RBP17.93■□□□□ 0.46
LIG1-204ENST00000542460 MYBL1P10243 752 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 HDCP19113 662 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 GBP2P32456 591 aaPredicted RBP17.93■□□□□ 0.46
LIG1-204ENST00000542460 TAF5Q15542 800 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 C10orf76Q5T2E6 689 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 FAM102AQ5T9C2 384 aaPredicted RBP17.93■□□□□ 0.46
LIG1-204ENST00000542460 DNAAF5Q86Y56 855 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 C3orf20Q8ND61 904 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 ACSF2Q96CM8 615 aaPredicted RBP17.93■□□□□ 0.46
LIG1-204ENST00000542460 CCSER2Q9H7U1 834 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 TRAV19A0A0A6YYK7 116 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 ANKRD62A6NC57 917 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 EIF3CLB5ME19 914 aaKnown RBP17.93■□□□□ 0.46
LIG1-204ENST00000542460 GOLGA8SH3BPF8 625 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 CAPN9O14815 690 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 NDUFA10O95299 355 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 LCA5LO95447 670 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 RRM1P23921 792 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 ATP5C1P36542 298 aaKnown RBP17.93■□□□□ 0.46
LIG1-204ENST00000542460 AVPR1AP37288 418 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 SPA17Q15506 151 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 KLHDC10Q6PID8 442 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 PHLDB2Q86SQ0 1253 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 CMTM8Q8IZV2 173 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 RNF139Q8WU17 664 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 EDEM1Q92611 657 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 KHSRPQ92945 711 aaKnown RBP eCLIP17.93■□□□□ 0.46
LIG1-204ENST00000542460 ZSWIM3Q96MP5 696 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 MYADMQ96S97 322 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 CYP2S1Q96SQ9 504 aa17.93■□□□□ 0.46
LIG1-204ENST00000542460 EIF3CQ99613 913 aaKnown RBP17.93■□□□□ 0.46
LIG1-204ENST00000542460 OLA1Q9NTK5 396 aaKnown RBP17.93■□□□□ 0.46
LIG1-204ENST00000542460 C2orf16Q68DN1 1984 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 NOTCH4Q99466 2003 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 ZNF263O14978 683 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 COCHO43405 550 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 NRDCO43847 1150 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 GRAP2O75791 330 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 OLFM2O95897 454 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 FYNP06241 537 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 PTMAP06454 111 aaKnown RBP17.92■□□□□ 0.46
LIG1-204ENST00000542460 KRT3P12035 628 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 LAMP2P13473 410 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 NCAM1P13591 858 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 ABCB4P21439 1286 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 WEE1P30291 646 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 GALCP54803 685 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 CCDC173Q0VFZ6 552 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 C10orf120Q5SQS8 335 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 POTEHQ6S545 545 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 RAD9BQ6WBX8 426 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 RSRC2Q7L4I2 434 aaKnown RBP17.92■□□□□ 0.46
LIG1-204ENST00000542460 ARCQ7LC44 396 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 ARL14EPQ8N8R7 260 aaPredicted RBP17.92■□□□□ 0.46
LIG1-204ENST00000542460 ZNF653Q96CK0 615 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 SLC2A13Q96QE2 648 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 NACA2Q9H009 215 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 RNF38Q9H0F5 515 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 PARVAQ9NVD7 372 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 CNOT8Q9UFF9 292 aaKnown RBP17.92■□□□□ 0.46
LIG1-204ENST00000542460 TMEM59LQ9UK28 342 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 NR2E1Q9Y466 385 aa17.92■□□□□ 0.46
LIG1-204ENST00000542460 SIGLEC16A6NMB1 481 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 IPO7O95373 1038 aaKnown RBP17.91■□□□□ 0.46
LIG1-204ENST00000542460 TBX18O95935 607 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 CKMP06732 381 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 H2AFZP0C0S5 128 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 IL9P15248 144 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 KCNQ1P51787 676 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 RNASE9P60153 205 aaKnown RBP17.91■□□□□ 0.46
LIG1-204ENST00000542460 GPC5P78333 572 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 MTF1Q14872 753 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 PLEKHA7Q6IQ23 1121 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 DNAJC24Q6P3W2 148 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 H2AFVQ71UI9 128 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 ZSCAN18Q8TBC5 510 aaPredicted RBP17.91■□□□□ 0.46
LIG1-204ENST00000542460 SLC22A12Q96S37 553 aa17.91■□□□□ 0.46
LIG1-204ENST00000542460 SELENOOQ9BVL4 669 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms