RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 SYT12Q8IV01 421 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 SLC41A1Q8IVJ1 513 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 PGBD3Q8N328 593 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 IQUBQ8NA54 791 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 PDZD8Q8NEN9 1154 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 SLC2A14Q8TDB8 520 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 OVCA2Q8WZ82 227 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 SYAP1Q96A49 352 aaPredicted RBP16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 SMARCD1Q96GM5 515 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 SPACA7Q96KW9 195 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 POLMQ9NP87 494 aaPredicted RBP16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 FAM49BQ9NUQ9 324 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 TBC1D14Q9P2M4 693 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 SH3BP1Q9Y3L3 701 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 RAD54BQ9Y620 910 aa16.38■□□□□ 0.21
CLSTN3-213ENST00000541953 PCNX2A6NKB5 2137 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 TBC1D3BA6NDS4 549 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 PRRT4C9JH25 899 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 CYP26A1O43174 497 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 MAP3K13O43283 966 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 HYAL3O43820 417 aaPredicted RBP16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 TLR5O60602 858 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 ATICP31939 592 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 MAP3K7CLP57077 242 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 CLDN10P78369 228 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 STK4Q13043 487 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 KNOP1Q1ED39 458 aaKnown RBP16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 HSF5Q4G112 596 aaPredicted RBP16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 ZNF667Q5HYK9 610 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 LYSMD4Q5XG99 296 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 JAKMIP2Q96AA8 810 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 LRRC27Q9C0I9 530 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 NMUR1Q9HB89 426 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 NUDT5Q9UKK9 219 aa16.37■□□□□ 0.21
CLSTN3-213ENST00000541953 IGHV1OR15-9A0A0B4J2B8 117 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 HHLA1C9JL84 531 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 K7ELQ4 463 aaPredicted RBP16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 PHACTR2O75167 634 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 CLSTN1O94985 981 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 YEATS4O95619 227 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 HOXB2P14652 356 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 NDUFV2P19404 249 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 ASPAP45381 313 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 TUBP50607 506 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 NDST1P52848 882 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 AMPD3Q01432 767 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 PKP1Q13835 747 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 SLC23A3Q6PIS1 610 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 PIP4P1Q86T03 277 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 KDF1Q8NAX2 398 aaPredicted RBP16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 KLF16Q9BXK1 252 aaPredicted RBP16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 CAPN10Q9HC96 672 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 CSNK1G1Q9HCP0 422 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 DNAJC17Q9NVM6 304 aaKnown RBP16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 DMAC2Q9NW81 257 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 DEC1Q9P2X7 70 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 KLK13Q9UKR3 277 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 PCDHA7Q9UN72 937 aa16.36■□□□□ 0.21
CLSTN3-213ENST00000541953 SMG1Q96Q15 3661 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 WASH3PC4AMC7 463 aa16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 NEDD8-MDP1E9PL57 170 aa16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 CFIP05156 583 aa16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 ADORA2BP29275 332 aa16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 SNRPFP62306 86 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 RPL6Q02878 288 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 SEMA3BQ13214 749 aa16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 RESP18Q5W5W9 173 aa16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 TPGS1Q6ZTW0 290 aa16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 BHMTQ93088 406 aa16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 OTUB2Q96DC9 234 aa16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 DUSP9Q99956 384 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 NUSAP1Q9BXS6 441 aaKnown RBP16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 KCTD10Q9H3F6 313 aa16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 SERTAD1Q9UHV2 236 aa16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 CYP8B1Q9UNU6 501 aa16.35■□□□□ 0.21
CLSTN3-213ENST00000541953 ACTN4O43707 911 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 CACNG3O60359 315 aa16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 TYRP14679 529 aa16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 NTSR1P30989 418 aa16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 LMAN2Q12907 356 aa16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 ZACNQ401N2 412 aa16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 BTBD8Q5XKL5 378 aa16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 GRAMD4Q6IC98 578 aa16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 CLEC20AQ6ZU45 233 aa16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 HTR3DQ70Z44 454 aa16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 IPO4Q8TEX9 1081 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 ZNF396Q96N95 335 aaPredicted RBP16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 GTPBP2Q9BX10 602 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 APOBEC3GQ9HC16 384 aaKnown RBP16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 CACNA2D2Q9NY47 1150 aa16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 PLK2Q9NYY3 685 aa16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 STARD13Q9Y3M8 1113 aa16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 ATP8B3O60423 1300 aa16.34■□□□□ 0.21
CLSTN3-213ENST00000541953 PVALEFA0A1B0GWK0 134 aa16.33■□□□□ 0.2
CLSTN3-213ENST00000541953 A0A1W2PQH9 124 aa16.33■□□□□ 0.2
CLSTN3-213ENST00000541953 ASS1P00966 412 aaKnown RBP16.33■□□□□ 0.2
CLSTN3-213ENST00000541953 CISD3P0C7P0 127 aa16.33■□□□□ 0.2
CLSTN3-213ENST00000541953 ZNF33AQ06730 810 aa16.33■□□□□ 0.2
CLSTN3-213ENST00000541953 SV2AQ7L0J3 742 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms