RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 CHRM5P08912 532 aaPredicted RBP7.15□□□□□ -1.26
YBX3-210ENST00000540975 NBPF7P0C2Y1 421 aaPredicted RBP7.15□□□□□ -1.26
YBX3-210ENST00000540975 CERS1P27544 350 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 RBL1P28749 1068 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 MPGP29372 298 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 HTR7P34969 479 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 ST3GAL2Q16842 350 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 C4orf46Q504U0 113 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 TMEM63BQ5T3F8 832 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 ZKSCAN2Q63HK3 967 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 HIBCHQ6NVY1 386 aaPredicted RBP7.15□□□□□ -1.26
YBX3-210ENST00000540975 CRTC1Q6UUV9 634 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 KIAA0408Q6ZU52 694 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 FSTL5Q8N475 847 aaPredicted RBP7.15□□□□□ -1.26
YBX3-210ENST00000540975 LINC01465Q8N7H1 131 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 C12orf76Q8N812 135 aaPredicted RBP7.15□□□□□ -1.26
YBX3-210ENST00000540975 CCDC150Q8NCX0 1101 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 NGDNQ8NEJ9 315 aaKnown RBP7.15□□□□□ -1.26
YBX3-210ENST00000540975 MBD3L2Q8NHZ7 208 aaPredicted RBP7.15□□□□□ -1.26
YBX3-210ENST00000540975 PARD3BQ8TEW8 1205 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 BRI3BPQ8WY22 251 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 VPS50Q96JG6 964 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 C5orf34Q96MH7 638 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 QTRT1Q9BXR0 403 aaKnown RBP7.15□□□□□ -1.26
YBX3-210ENST00000540975 MAGEB5Q9BZ81 275 aa7.15□□□□□ -1.26
YBX3-210ENST00000540975 GAR1Q9NY12 217 aaKnown RBP7.15□□□□□ -1.26
YBX3-210ENST00000540975 PPP6CO00743 305 aa7.14□□□□□ -1.27
YBX3-210ENST00000540975 GCATO75600 419 aa7.14□□□□□ -1.27
YBX3-210ENST00000540975 MYL1P05976 194 aa7.14□□□□□ -1.27
YBX3-210ENST00000540975 CYP2A6P11509 494 aaPredicted RBP7.14□□□□□ -1.27
YBX3-210ENST00000540975 MYL4P12829 197 aa7.14□□□□□ -1.27
YBX3-210ENST00000540975 ATF7P17544 494 aaPredicted RBP7.14□□□□□ -1.27
YBX3-210ENST00000540975 TM4SF4P48230 202 aa7.14□□□□□ -1.27
YBX3-210ENST00000540975 TBX4P57082 545 aa7.14□□□□□ -1.27
YBX3-210ENST00000540975 EIF4A1P60842 406 aaKnown RBP7.14□□□□□ -1.27
YBX3-210ENST00000540975 CERKLQ49MI3 558 aaPredicted RBP7.14□□□□□ -1.27
YBX3-210ENST00000540975 SUN3Q8TAQ9 357 aa7.14□□□□□ -1.27
YBX3-210ENST00000540975 GDF15Q99988 308 aa7.14□□□□□ -1.27
YBX3-210ENST00000540975 SH2D3AQ9BRG2 576 aa7.14□□□□□ -1.27
YBX3-210ENST00000540975 MAN2B2Q9Y2E5 1009 aa7.14□□□□□ -1.27
YBX3-210ENST00000540975 DNAJC9-AS1A6NH13 148 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 H3BNC9 293 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 NCK2O43639 380 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 FGF18O76093 207 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 TMEM225BP0DP42 221 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 TNFSF4P23510 183 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 YY1P25490 414 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 CFHR3Q02985 330 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 MTAPQ13126 283 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 ACOX1Q15067 660 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 SRSF7Q16629 238 aaKnown RBP eCLIP7.13□□□□□ -1.27
YBX3-210ENST00000540975 LONRF1Q17RB8 773 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 IL31Q6EBC2 164 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 GRHL2Q6ISB3 625 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 USP17L6PQ6QN14 398 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 PNPLA1Q8N8W4 532 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 EDC3Q96F86 508 aaKnown RBP7.13□□□□□ -1.27
YBX3-210ENST00000540975 SNX27Q96L92 541 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 RIPOR3Q96MK2 946 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 TMOD4Q9NZQ9 345 aa7.13□□□□□ -1.27
YBX3-210ENST00000540975 ZMYND8Q9ULU4 1186 aaPredicted RBP7.13□□□□□ -1.27
YBX3-210ENST00000540975 CCNT2O60583 730 aaKnown RBP7.12□□□□□ -1.27
YBX3-210ENST00000540975 PRR35P0CG20 571 aa7.12□□□□□ -1.27
YBX3-210ENST00000540975 ARP10275 920 aa7.12□□□□□ -1.27
YBX3-210ENST00000540975 HARSP12081 509 aaKnown RBP7.12□□□□□ -1.27
YBX3-210ENST00000540975 ADRA1DP25100 572 aa7.12□□□□□ -1.27
YBX3-210ENST00000540975 GABRB3P28472 473 aa7.12□□□□□ -1.27
YBX3-210ENST00000540975 AK2P54819 239 aa7.12□□□□□ -1.27
YBX3-210ENST00000540975 SSBP2P81877 361 aaPredicted RBP7.12□□□□□ -1.27
YBX3-210ENST00000540975 FAXCQ5TGI0 409 aa7.12□□□□□ -1.27
YBX3-210ENST00000540975 CCDC181Q5TID7 509 aa7.12□□□□□ -1.27
YBX3-210ENST00000540975 RAP1GAP2Q684P5 730 aa7.12□□□□□ -1.27
YBX3-210ENST00000540975 ABLIM2Q6H8Q1 611 aa7.12□□□□□ -1.27
YBX3-210ENST00000540975 TMEM65Q6PI78 240 aa7.12□□□□□ -1.27
YBX3-210ENST00000540975 YTHDF3Q7Z739 585 aaKnown RBP7.12□□□□□ -1.27
YBX3-210ENST00000540975 TXLNBQ8N3L3 684 aa7.12□□□□□ -1.27
YBX3-210ENST00000540975 MAFAQ8NHW3 353 aaPredicted RBP7.12□□□□□ -1.27
YBX3-210ENST00000540975 ABHD5Q8WTS1 349 aa7.12□□□□□ -1.27
YBX3-210ENST00000540975 KAZALD1Q96I82 304 aa7.12□□□□□ -1.27
YBX3-210ENST00000540975 PHTF1Q9UMS5 762 aa7.12□□□□□ -1.27
YBX3-210ENST00000540975 CA12O43570 354 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 WDR47O94967 919 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 NDST3O95803 873 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 KELP23276 732 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 EPHB2P29323 1055 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 PICALMQ13492 652 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 EEF1AKMT2Q5JPI9 291 aaKnown RBP7.11□□□□□ -1.27
YBX3-210ENST00000540975 SLC18B1Q6NT16 456 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 MRNIPQ6NTE8 343 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 NEK8Q86SG6 692 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 CCDC28AQ8IWP9 274 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 GALNT16Q8N428 558 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 FAM71DQ8N9W8 422 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 PRR11Q96HE9 360 aaPredicted RBP7.11□□□□□ -1.27
YBX3-210ENST00000540975 CCDC138Q96M89 665 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 EIF2AQ9BY44 585 aaKnown RBP7.11□□□□□ -1.27
YBX3-210ENST00000540975 PCDHAC1Q9H158 963 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 USP29Q9HBJ7 922 aa7.11□□□□□ -1.27
YBX3-210ENST00000540975 WDR17Q8IZU2 1322 aa7.1□□□□□ -1.27
YBX3-210ENST00000540975 RASA4BC9J798 803 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms