RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 SPACA7Q96KW9 195 aa14.93□□□□□ -0.02
SNHG1-213ENST00000540725 SPATA32Q96LK8 384 aa14.93□□□□□ -0.02
SNHG1-213ENST00000540725 TWNKQ96RR1 684 aa14.93□□□□□ -0.02
SNHG1-213ENST00000540725 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.93□□□□□ -0.021e-323■■■■□ 19.6
SNHG1-213ENST00000540725 BCCIPQ9P287 314 aaKnown RBP eCLIP14.93□□□□□ -0.02
SNHG1-213ENST00000540725 ANGPTL2Q9UKU9 493 aa14.93□□□□□ -0.02
SNHG1-213ENST00000540725 CIZ1Q9ULV3 898 aaPredicted RBP14.93□□□□□ -0.02
SNHG1-213ENST00000540725 ADAMTS9Q9P2N4 1935 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 TCRBV21S2A2A0A5A6 115 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 PATE3B3GLJ2 98 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 KHNYNO15037 678 aaKnown RBP14.92□□□□□ -0.02
SNHG1-213ENST00000540725 MAPK13O15264 365 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 KRT37O76014 449 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 KIF20AO95235 890 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 TBX18O95935 607 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 PRR29P0C7W0 189 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 TRIM49P0CI25 452 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 TRIM49CP0CI26 452 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 NR2F2P24468 414 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 SYKP43405 635 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 PREPLQ4J6C6 727 aaPredicted RBP14.92□□□□□ -0.02
SNHG1-213ENST00000540725 CLEC20AQ6ZU45 233 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 ZNF513Q8N8E2 541 aaPredicted RBP14.92□□□□□ -0.02
SNHG1-213ENST00000540725 TERB1Q8NA31 727 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 PIGKQ92643 395 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 CCDC47Q96A33 483 aaKnown RBP14.92□□□□□ -0.02
SNHG1-213ENST00000540725 JAKMIP2Q96AA8 810 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 CHAMP1Q96JM3 812 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 HNRNPABQ99729 332 aaKnown RBP14.92□□□□□ -0.02
SNHG1-213ENST00000540725 KLF16Q9BXK1 252 aaPredicted RBP14.92□□□□□ -0.02
SNHG1-213ENST00000540725 IMPG2Q9BZV3 1241 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 CYLDQ9NQC7 956 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 SCML2Q9UQR0 700 aa14.92□□□□□ -0.02
SNHG1-213ENST00000540725 HHLA1C9JL84 531 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 TRIM24O15164 1050 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 CYP26A1O43174 497 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 MAP3K13O43283 966 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 GREM1O60565 184 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 RHOBTB3O94955 611 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 GCLMP48507 274 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 KRT85P78386 507 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 NFIL3Q16649 462 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 ST3GAL2Q16842 350 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 C10orf76Q5T2E6 689 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 DAB2IPQ5VWQ8 1189 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 PSAPL1Q6NUJ1 521 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 NUDT18Q6ZVK8 323 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 HTR3DQ70Z44 454 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 INTS8Q75QN2 995 aaKnown RBP14.91□□□□□ -0.02
SNHG1-213ENST00000540725 LPCAT2Q7L5N7 544 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 TRMT11Q7Z4G4 463 aaKnown RBP14.91□□□□□ -0.02
SNHG1-213ENST00000540725 PGBD3Q8N328 593 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 KCNV2Q8TDN2 545 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 TAS1R2Q8TE23 839 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 CYFIP2Q96F07 1278 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 NT5C1AQ9BXI3 368 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 NIF3L1Q9GZT8 377 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 CYP3A43Q9HB55 503 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 APOBEC3GQ9HC16 384 aaKnown RBP14.91□□□□□ -0.02
SNHG1-213ENST00000540725 TMEM9BQ9NQ34 198 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 OSER1Q9NX31 292 aa14.91□□□□□ -0.02
SNHG1-213ENST00000540725 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 FAM237AA0A1B0GTK4 181 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 KRT13P13646 458 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 CD58P19256 250 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 ACO1P21399 889 aaKnown RBP14.9□□□□□ -0.02
SNHG1-213ENST00000540725 ATP5C1P36542 298 aaKnown RBP14.9□□□□□ -0.02
SNHG1-213ENST00000540725 NOVA1P51513 510 aaKnown RBP14.9□□□□□ -0.02
SNHG1-213ENST00000540725 NDUFA8P51970 172 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 SHC2P98077 582 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 PPP3CAQ08209 521 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 GOLGA8FQ08AF8 430 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 GOLGA8DPQ0D2H9 430 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 DPYDQ12882 1025 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 BYSLQ13895 437 aaKnown RBP14.9□□□□□ -0.02
SNHG1-213ENST00000540725 MAP7D1Q3KQU3 841 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 GRAMD4Q6IC98 578 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 ARMCX6Q7L4S7 300 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 FAM186BQ8IYM0 893 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 TMEFF1Q8IYR6 380 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 FRMD1Q8N878 549 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 MMRN2Q9H8L6 949 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 NMUR1Q9HB89 426 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 PNPLA8Q9NP80 782 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 DNAJC17Q9NVM6 304 aaKnown RBP14.9□□□□□ -0.02
SNHG1-213ENST00000540725 MBD1Q9UIS9 605 aaPredicted RBP14.9□□□□□ -0.02
SNHG1-213ENST00000540725 LSM7Q9UK45 103 aaKnown RBP14.9□□□□□ -0.02
SNHG1-213ENST00000540725 HCN2Q9UL51 889 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 MAPK8IP1Q9UQF2 711 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 PCDHA5Q9Y5H7 936 aa14.9□□□□□ -0.02
SNHG1-213ENST00000540725 A0A1W2PQH9 124 aa14.89□□□□□ -0.03
SNHG1-213ENST00000540725 NEDD8-MDP1E9PL57 170 aa14.89□□□□□ -0.03
SNHG1-213ENST00000540725 MDM4O15151 490 aa14.89□□□□□ -0.03
SNHG1-213ENST00000540725 CACNG3O60359 315 aa14.89□□□□□ -0.03
SNHG1-213ENST00000540725 CILPO75339 1184 aa14.89□□□□□ -0.03
SNHG1-213ENST00000540725 HOXB2P14652 356 aa14.89□□□□□ -0.03
SNHG1-213ENST00000540725 TYRP14679 529 aa14.89□□□□□ -0.03
SNHG1-213ENST00000540725 WASP42768 502 aa14.89□□□□□ -0.03
SNHG1-213ENST00000540725 PTGER3P43115 390 aa14.89□□□□□ -0.03
SNHG1-213ENST00000540725 IRX4P78413 519 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms