RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 PAK5Q9P286 719 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 TTLL3Q9Y4R7 772 aa11.68□□□□□ -0.54
SYNE1-237ENST00000539504 PRPSAP2O60256 369 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 STK10O94804 968 aaKnown RBP11.67□□□□□ -0.54
SYNE1-237ENST00000539504 PROCP04070 461 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 SERPINA6P08185 405 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 NAMPTP43490 491 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 CDK7P50613 346 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 MRPS5P82675 430 aaKnown RBP11.67□□□□□ -0.54
SYNE1-237ENST00000539504 PDE1BQ01064 536 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 STKLD1Q8NE28 680 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 EZH1Q92800 747 aaPredicted RBP11.67□□□□□ -0.54
SYNE1-237ENST00000539504 GJD4Q96KN9 370 aaPredicted RBP11.67□□□□□ -0.54
SYNE1-237ENST00000539504 S100A14Q9HCY8 104 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 ZNF302Q9NR11 478 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 ASNSD1Q9NWL6 643 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 KDM4FA0A1W2PPD8 638 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 MED7O43513 233 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 STBD1O95210 358 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 CSH1P0DML2 217 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 CSH2P0DML3 217 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 KCNA2P16389 499 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 KCNA4P22459 653 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 RBL1P28749 1068 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 COPAP53621 1224 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 BCAR1P56945 870 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 FASTKD1Q53R41 847 aaKnown RBP11.67□□□□□ -0.54
SYNE1-237ENST00000539504 TCHHL1Q5QJ38 904 aaPredicted RBP11.67□□□□□ -0.54
SYNE1-237ENST00000539504 SNRNP48Q6IEG0 339 aaKnown RBP11.67□□□□□ -0.54
SYNE1-237ENST00000539504 OR6B2Q6IFH4 312 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 TRMT10BQ6PF06 316 aaKnown RBP11.67□□□□□ -0.54
SYNE1-237ENST00000539504 BRSK2Q8IWQ3 736 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 NSUN6Q8TEA1 469 aaKnown RBP11.67□□□□□ -0.54
SYNE1-237ENST00000539504 GDPD5Q8WTR4 605 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 NMD3Q96D46 503 aaKnown RBP11.67□□□□□ -0.54
SYNE1-237ENST00000539504 C20orf27Q9GZN8 174 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 NGRNQ9NPE2 291 aaKnown RBP11.67□□□□□ -0.54
SYNE1-237ENST00000539504 PDLIM7Q9NR12 457 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 PLA2G4CQ9UP65 541 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 E2F8A0AVK6 867 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 TTLL13PA6NNM8 815 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 M0QYV0 167 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 TNNC2P02585 160 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 BPGMP07738 259 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 CRABP2P29373 138 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 TBCCQ15814 346 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 PPP6R3Q5H9R7 873 aaPredicted RBP11.67□□□□□ -0.54
SYNE1-237ENST00000539504 SH3PXD2AQ5TCZ1 1133 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 ARMC3Q5W041 872 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 SH2D5Q6ZV89 423 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 NME8Q8N427 588 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 PPP4R1Q8TF05 950 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 CCDC106Q9BWC9 280 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 PORCNQ9H237 461 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 THAP1Q9NVV9 213 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 STYXL1Q9Y6J8 313 aa11.67□□□□□ -0.54
SYNE1-237ENST00000539504 CHADO15335 359 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 CREB3O43889 395 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 RFPL1O75677 317 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 TRUB2O95900 331 aaKnown RBP11.66□□□□□ -0.54
SYNE1-237ENST00000539504 APOEP02649 317 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 ERBB2P04626 1255 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 EDN1P05305 212 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 PEX6Q13608 980 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 KCNJ11Q14654 390 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 CES4AQ5XG92 561 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 WDR49Q8IV35 697 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 UBA3Q8TBC4 463 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 LPAR1Q92633 364 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 KLHL4Q9C0H6 718 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 GPAMQ9HCL2 828 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 CYTH4Q9UIA0 394 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 ZMPSTE24O75844 475 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 PDGFRAP16234 1089 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 PEX2P28328 305 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 NOMO1Q15155 1222 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 C15orf59Q2T9L4 293 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-237ENST00000539504 SFT2D3Q587I9 215 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 RSBN1LQ6PCB5 846 aaPredicted RBP11.66□□□□□ -0.54
SYNE1-237ENST00000539504 SESTD1Q86VW0 696 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 MAP7D3Q8IWC1 876 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 TTLL6Q8N841 843 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 WNK4Q96J92 1243 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 SMYD2Q9NRG4 433 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 DDX43Q9NXZ2 648 aaKnown RBP11.66□□□□□ -0.54
SYNE1-237ENST00000539504 MAP3K20Q9NYL2 800 aaKnown RBP11.66□□□□□ -0.54
SYNE1-237ENST00000539504 SIRPGQ9P1W8 387 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 MYH9P35579 1960 aaKnown RBP11.66□□□□□ -0.54
SYNE1-237ENST00000539504 A6NJR5 290 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 SORBS2O94875 1100 aaKnown RBP11.66□□□□□ -0.54
SYNE1-237ENST00000539504 OATP04181 439 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 SUPT20HL2P0C7V6 817 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 AQP4P55087 323 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 MAP7Q14244 749 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 SUPT20HL1Q3ZLR7 823 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 SPDYE2Q495Y8 402 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 TMCO4Q5TGY1 634 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 FAM91A1Q658Y4 838 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 UNC5AQ6ZN44 842 aa11.66□□□□□ -0.54
SYNE1-237ENST00000539504 DEFB107AQ8IZN7 70 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms