RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 CHAMP1Q96JM3 812 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 XPO6Q96QU8 1125 aaKnown RBP15.55■□□□□ 0.08
VPS28-215ENST00000531924 EDEM2Q9BV94 578 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 TMEM8AQ9HCN3 771 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 RXFP3Q9NSD7 469 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 WDR35Q9P2L0 1181 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 SCML2Q9UQR0 700 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 PCDHA5Q9Y5H7 936 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 PTPRDP23468 1912 aa15.55■□□□□ 0.08
VPS28-215ENST00000531924 SPTBN2O15020 2390 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 A0A0A0MRY4 1105 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 FAM237AA0A1B0GTK4 181 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 GOLGA6L4A6NEF3 574 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 ANTXRLA6NF34 631 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 CYP26A1O43174 497 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 ZNF202O95125 648 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 TBX18O95935 607 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 EPB41P11171 864 aaKnown RBP15.54■□□□□ 0.08
VPS28-215ENST00000531924 GTF2H1P32780 548 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 ENPEPQ07075 957 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 PPP3CAQ08209 521 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 C10orf120Q5SQS8 335 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 DAB2IPQ5VWQ8 1189 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 PMS2CLQ68D20 193 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 GRAMD4Q6IC98 578 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 CLEC20AQ6ZU45 233 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 TTC39CQ8N584 583 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 ZNF513Q8N8E2 541 aaPredicted RBP15.54■□□□□ 0.08
VPS28-215ENST00000531924 HEXIM2Q96MH2 286 aaKnown RBP15.54■□□□□ 0.08
VPS28-215ENST00000531924 DUSP9Q99956 384 aaKnown RBP15.54■□□□□ 0.08
VPS28-215ENST00000531924 BBS2Q9BXC9 721 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 ZDHHC4Q9NPG8 344 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 DNAJC17Q9NVM6 304 aaKnown RBP15.54■□□□□ 0.08
VPS28-215ENST00000531924 RMND1Q9NWS8 449 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 DNMT3LQ9UJW3 386 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 NAGPAQ9UK23 515 aa15.54■□□□□ 0.08
VPS28-215ENST00000531924 SDK1Q7Z5N4 2213 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 RALGAPA1Q6GYQ0 2036 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 HELZP42694 1942 aaKnown RBP15.53■□□□□ 0.08
VPS28-215ENST00000531924 A0A1W2PQH9 124 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 TCRBV21S2A2A0A5A6 115 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 NEDD8-MDP1E9PL57 170 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 CETN3O15182 167 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 RALAP11233 206 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 RARGP13631 454 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 BCKDHBP21953 392 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 KIR2DL1P43626 348 aaPredicted RBP15.53■□□□□ 0.08
VPS28-215ENST00000531924 PLA2G4AP47712 749 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 PSEN1P49768 467 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 SLC8A3P57103 927 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 MESP2Q0VG99 397 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 ZNF394Q53GI3 561 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 KRT39Q6A163 491 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 TPGS1Q6ZTW0 290 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 HTR3DQ70Z44 454 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 GPRIN1Q7Z2K8 1008 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 RLN3Q8WXF3 142 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 PIGKQ92643 395 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 TWNKQ96RR1 684 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 CDK5RAP1Q96SZ6 601 aaKnown RBP15.53■□□□□ 0.08
VPS28-215ENST00000531924 KLF16Q9BXK1 252 aaPredicted RBP15.53■□□□□ 0.08
VPS28-215ENST00000531924 APOBEC3GQ9HC16 384 aaKnown RBP15.53■□□□□ 0.08
VPS28-215ENST00000531924 PNPLA8Q9NP80 782 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 CYLDQ9NQC7 956 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 ZDHHC9Q9Y397 364 aa15.53■□□□□ 0.08
VPS28-215ENST00000531924 C4orf47A7E2U8 309 aa15.52■□□□□ 0.08
VPS28-215ENST00000531924 CILPO75339 1184 aa15.52■□□□□ 0.08
VPS28-215ENST00000531924 TYRP14679 529 aa15.52■□□□□ 0.08
VPS28-215ENST00000531924 PGFP49763 221 aa15.52■□□□□ 0.08
VPS28-215ENST00000531924 MXI1P50539 228 aa15.52■□□□□ 0.08
VPS28-215ENST00000531924 EDRF1Q3B7T1 1238 aa15.52■□□□□ 0.08
VPS28-215ENST00000531924 MIB1Q86YT6 1006 aa15.52■□□□□ 0.08
VPS28-215ENST00000531924 ETFBKMTQ8IXQ9 262 aa15.52■□□□□ 0.08
VPS28-215ENST00000531924 TERB1Q8NA31 727 aa15.52■□□□□ 0.08
VPS28-215ENST00000531924 WBP2Q969T9 261 aa15.52■□□□□ 0.08
VPS28-215ENST00000531924 TSG101Q99816 390 aa15.52■□□□□ 0.08
VPS28-215ENST00000531924 DUSP16Q9BY84 665 aa15.52■□□□□ 0.08
VPS28-215ENST00000531924 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 ADAM23O75077 832 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 HOXB2P14652 356 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 HNRNPLP14866 589 aaKnown RBP eCLIP15.51■□□□□ 0.07
VPS28-215ENST00000531924 NTSR1P30989 418 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 P2RY2P41231 377 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 WASP42768 502 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 TCERG1LQ5VWI1 586 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 KLHDC10Q6PID8 442 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 RSRC2Q7L4I2 434 aaKnown RBP15.51■□□□□ 0.07
VPS28-215ENST00000531924 ARMCX6Q7L4S7 300 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 TMEFF1Q8IYR6 380 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 CHPFQ8IZ52 775 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 ARHGAP18Q8N392 663 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 PHTF2Q8N3S3 785 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 FBXL13Q8NEE6 735 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 OLIG1Q8TAK6 271 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 BHMTQ93088 406 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 EEF2KMTQ96G04 330 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 LSM14BQ9BX40 385 aaKnown RBP15.51■□□□□ 0.07
VPS28-215ENST00000531924 GOLPH3LQ9H4A5 285 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 NMUR1Q9HB89 426 aa15.51■□□□□ 0.07
VPS28-215ENST00000531924 GDPD2Q9HCC8 539 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms