RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 CCDC34Q96HJ3 373 aa17.76■□□□□ 0.43
CPSF1-207ENST00000531727 KLF16Q9BXK1 252 aaPredicted RBP17.76■□□□□ 0.43
CPSF1-207ENST00000531727 DNAI2Q9GZS0 605 aa17.76■□□□□ 0.43
CPSF1-207ENST00000531727 GDPD2Q9HCC8 539 aa17.76■□□□□ 0.43
CPSF1-207ENST00000531727 CYLDQ9NQC7 956 aa17.76■□□□□ 0.43
CPSF1-207ENST00000531727 PCDHA5Q9Y5H7 936 aa17.76■□□□□ 0.43
CPSF1-207ENST00000531727 BCLAF3A2AJT9 711 aaKnown RBP17.75■□□□□ 0.43
CPSF1-207ENST00000531727 GREM1O60565 184 aa17.75■□□□□ 0.43
CPSF1-207ENST00000531727 TULP3O75386 442 aa17.75■□□□□ 0.43
CPSF1-207ENST00000531727 ACO1P21399 889 aaKnown RBP17.75■□□□□ 0.43
CPSF1-207ENST00000531727 ATP5C1P36542 298 aaKnown RBP17.75■□□□□ 0.43
CPSF1-207ENST00000531727 CREB5Q02930 508 aa17.75■□□□□ 0.43
CPSF1-207ENST00000531727 ANO4Q32M45 955 aa17.75■□□□□ 0.43
CPSF1-207ENST00000531727 STPG1Q5TH74 334 aa17.75■□□□□ 0.43
CPSF1-207ENST00000531727 KRT39Q6A163 491 aa17.75■□□□□ 0.43
CPSF1-207ENST00000531727 TTC30AQ86WT1 665 aa17.75■□□□□ 0.43
CPSF1-207ENST00000531727 TMEM25Q86YD3 366 aa17.75■□□□□ 0.43
CPSF1-207ENST00000531727 NAT16Q8N8M0 369 aa17.75■□□□□ 0.43
CPSF1-207ENST00000531727 OLIG1Q8TAK6 271 aa17.75■□□□□ 0.43
CPSF1-207ENST00000531727 NMUR1Q9HB89 426 aa17.75■□□□□ 0.43
CPSF1-207ENST00000531727 POLMQ9NP87 494 aaPredicted RBP17.75■□□□□ 0.43
CPSF1-207ENST00000531727 OSER1Q9NX31 292 aa17.75■□□□□ 0.43
CPSF1-207ENST00000531727 DEC1Q9P2X7 70 aa17.75■□□□□ 0.43
CPSF1-207ENST00000531727 TBC1D3BA6NDS4 549 aa17.74■□□□□ 0.43
CPSF1-207ENST00000531727 TM4SF5O14894 197 aa17.74■□□□□ 0.43
CPSF1-207ENST00000531727 ADAM23O75077 832 aa17.74■□□□□ 0.43
CPSF1-207ENST00000531727 CAVIN2O95810 425 aa17.74■□□□□ 0.43
CPSF1-207ENST00000531727 GOLGA8FQ08AF8 430 aa17.74■□□□□ 0.43
CPSF1-207ENST00000531727 GOLGA8DPQ0D2H9 430 aa17.74■□□□□ 0.43
CPSF1-207ENST00000531727 PPP1R26Q5T8A7 1209 aaPredicted RBP17.74■□□□□ 0.43
CPSF1-207ENST00000531727 KLHDC10Q6PID8 442 aa17.74■□□□□ 0.43
CPSF1-207ENST00000531727 SMYD4Q8IYR2 804 aaPredicted RBP17.74■□□□□ 0.43
CPSF1-207ENST00000531727 KCNV2Q8TDN2 545 aa17.74■□□□□ 0.43
CPSF1-207ENST00000531727 FAXDC2Q96IV6 333 aa17.74■□□□□ 0.43
CPSF1-207ENST00000531727 DUSP16Q9BY84 665 aa17.74■□□□□ 0.43
CPSF1-207ENST00000531727 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.74■□□□□ 0.43
CPSF1-207ENST00000531727 LSM7Q9UK45 103 aaKnown RBP17.74■□□□□ 0.43
CPSF1-207ENST00000531727 A0A1W2PQH9 124 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 STX10O60499 249 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 EPB41P11171 864 aaKnown RBP17.73■□□□□ 0.43
CPSF1-207ENST00000531727 RARGP13631 454 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 BCKDHBP21953 392 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 PSEN1P49768 467 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 MXI1P50539 228 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 KIF11P52732 1056 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 TCEAL6Q6IPX3 200 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 NUDT18Q6ZVK8 323 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 CCDC186Q7Z3E2 898 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 TRMT11Q7Z4G4 463 aaKnown RBP17.73■□□□□ 0.43
CPSF1-207ENST00000531727 TTC39CQ8N584 583 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 TERB1Q8NA31 727 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 FBXL13Q8NEE6 735 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 SEMA4DQ92854 862 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 TCEAL3Q969E4 200 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 EEF2KMTQ96G04 330 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 ZDHHC4Q9NPG8 344 aa17.73■□□□□ 0.43
CPSF1-207ENST00000531727 NCOR2Q9Y618 2525 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 LAMA1P25391 3075 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 THADAQ6YHU6 1953 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 CETN3O15182 167 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 P2RY2P41231 377 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 PNOCQ13519 176 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 ZNF394Q53GI3 561 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 C10orf76Q5T2E6 689 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 GRAMD4Q6IC98 578 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 ZNF276Q8N554 614 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 ZNF513Q8N8E2 541 aaPredicted RBP17.72■□□□□ 0.43
CPSF1-207ENST00000531727 SPACA7Q96KW9 195 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 HEXIM2Q96MH2 286 aaKnown RBP17.72■□□□□ 0.43
CPSF1-207ENST00000531727 CNTNAP3BQ96NU0 1288 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 CNTNAP3Q9BZ76 1288 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 CISHQ9NSE2 258 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 DNAJC17Q9NVM6 304 aaKnown RBP17.72■□□□□ 0.43
CPSF1-207ENST00000531727 RMND1Q9NWS8 449 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 RAB20Q9NX57 234 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 MARK1Q9P0L2 795 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 BCCIPQ9P287 314 aaKnown RBP eCLIP17.72■□□□□ 0.43
CPSF1-207ENST00000531727 DNMT3LQ9UJW3 386 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 USP3Q9Y6I4 520 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 NUP205Q92621 2012 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 PLXND1Q9Y4D7 1925 aa17.72■□□□□ 0.43
CPSF1-207ENST00000531727 TCRBV21S2A2A0A5A6 115 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 NEDD8-MDP1E9PL57 170 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 MDM4O15151 490 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 TRIM24O15164 1050 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 CACNG3O60359 315 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 TYRP14679 529 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 KCNA4P22459 653 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 PRCPP42785 496 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 PLA2G4AP47712 749 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 COBLL1Q53SF7 1204 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 C10orf120Q5SQS8 335 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 RNF43Q68DV7 783 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 CYP2U1Q7Z449 544 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 SCD5Q86SK9 330 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 TADA2BQ86TJ2 420 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 FMR1NBQ8N0W7 255 aaPredicted RBP17.71■□□□□ 0.43
CPSF1-207ENST00000531727 HMGB4Q8WW32 186 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 RLN3Q8WXF3 142 aa17.71■□□□□ 0.43
CPSF1-207ENST00000531727 TMEM176AQ96HP8 235 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms