RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TRIM68Q6AZZ1 485 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 POTEAQ6S8J7 498 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 ILDR2Q71H61 639 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.01■□□□□ 0.794e-6■□□□□ 11.3
VPS28-213ENST00000530983 CNKSR2Q8WXI2 1034 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 OXNAD1Q96HP4 312 aaPredicted RBP20.01■□□□□ 0.79
VPS28-213ENST00000530983 HPDLQ96IR7 371 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 FGD4Q96M96 766 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 OSBPL1AQ9BXW6 950 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 IFT122Q9HBG6 1241 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 GPATCH2LQ9NWQ4 482 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 HEY1Q9Y5J3 304 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 POLR2AP24928 1970 aaKnown RBP20.01■□□□□ 0.79
VPS28-213ENST00000530983 GYG2O15488 501 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 MAP3K6O95382 1288 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 LMNAP02545 664 aaKnown RBP20.01■□□□□ 0.79
VPS28-213ENST00000530983 PGK2P07205 417 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 PFKMP08237 780 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 PRKCHP24723 683 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 NDST1P52848 882 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 MRPS5P82675 430 aaKnown RBP20.01■□□□□ 0.79
VPS28-213ENST00000530983 SARNPP82979 210 aaKnown RBP20.01■□□□□ 0.79
VPS28-213ENST00000530983 VGLL4Q14135 290 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 RINLQ6ZS11 566 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 SPATA33Q96N06 139 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 MECRQ9BV79 373 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 IQCGQ9H095 443 aaKnown RBP20.01■□□□□ 0.79
VPS28-213ENST00000530983 SMYD2Q9NRG4 433 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 ETNK2Q9NVF9 386 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 TAS2R1Q9NYW7 299 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 ZNF180Q9UJW8 692 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 TSPAN16Q9UKR8 245 aa20.01■□□□□ 0.79
VPS28-213ENST00000530983 TRIP11Q15643 1979 aa20■□□□□ 0.79
VPS28-213ENST00000530983 SNRPAP09012 282 aaKnown RBP20■□□□□ 0.79
VPS28-213ENST00000530983 INCA1Q0VD86 236 aa20■□□□□ 0.79
VPS28-213ENST00000530983 LCLAT1Q6UWP7 414 aa20■□□□□ 0.79
VPS28-213ENST00000530983 APBB1IPQ7Z5R6 666 aaPredicted RBP20■□□□□ 0.79
VPS28-213ENST00000530983 MAP7D3Q8IWC1 876 aa20■□□□□ 0.79
VPS28-213ENST00000530983 SPDYE1Q8NFV5 336 aaPredicted RBP20■□□□□ 0.79
VPS28-213ENST00000530983 LRRN4Q8WUT4 740 aa20■□□□□ 0.79
VPS28-213ENST00000530983 FRMD8Q9BZ67 464 aaPredicted RBP20■□□□□ 0.79
VPS28-213ENST00000530983 BARX2Q9UMQ3 279 aaPredicted RBP20■□□□□ 0.79
VPS28-213ENST00000530983 PLLPQ9Y342 182 aa20■□□□□ 0.79
VPS28-213ENST00000530983 ZSWIM8A7E2V4 1837 aa20■□□□□ 0.79
VPS28-213ENST00000530983 FCHO1O14526 889 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 USP2O75604 605 aaPredicted RBP19.99■□□□□ 0.79
VPS28-213ENST00000530983 RFPL1O75677 317 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 KRT37O76014 449 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 APRTP07741 180 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 ATP6V1C1P21283 382 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 OSBPP22059 807 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 MAGEA6P43360 314 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 BCAR1P56945 870 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 PDK2Q15119 407 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 SLC10A6Q3KNW5 377 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 CMPK2Q5EBM0 449 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 CES4AQ5XG92 561 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 PCDH19Q8TAB3 1148 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 COPS5Q92905 334 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 NMUR2Q9GZQ4 415 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 GBA2Q9HCG7 927 aaPredicted RBP19.99■□□□□ 0.79
VPS28-213ENST00000530983 PCDH18Q9HCL0 1135 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 PRMT7Q9NVM4 692 aaPredicted RBP19.99■□□□□ 0.79
VPS28-213ENST00000530983 RGS17Q9UGC6 210 aaPredicted RBP19.99■□□□□ 0.79
VPS28-213ENST00000530983 APOL1O14791 398 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 UGT1A9O60656 530 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 ZBED1O96006 694 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 P4HA1P13674 534 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 TGM2P21980 687 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 AMHR2Q16671 573 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 CA9Q16790 459 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 HSF5Q4G112 596 aaPredicted RBP19.99■□□□□ 0.79
VPS28-213ENST00000530983 SLC9A4Q6AI14 798 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 SCYL2Q6P3W7 929 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 ALYREFQ86V81 257 aaKnown RBP19.99■□□□□ 0.79
VPS28-213ENST00000530983 C12orf29Q8N999 325 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 SH3GL3Q99963 347 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 NFKBIZQ9BYH8 718 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 KLC2Q9H0B6 622 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 PDZD7Q9H5P4 517 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 UGT1A7Q9HAW7 530 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 UGT1A10Q9HAW8 530 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 UGT1A8Q9HAW9 530 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 ARHGEF4Q9NR80 690 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 ARMCX1Q9P291 453 aa19.99■□□□□ 0.79
VPS28-213ENST00000530983 BCLAF3A2AJT9 711 aaKnown RBP19.98■□□□□ 0.79
VPS28-213ENST00000530983 SLC15A5A6NIM6 579 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 TRDMT1O14717 391 aaKnown RBP19.98■□□□□ 0.79
VPS28-213ENST00000530983 MCF2P10911 925 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 RGS7P49802 495 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 BIRC2Q13490 618 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 BMPR2Q13873 1038 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 KPNB1Q14974 876 aaKnown RBP19.98■□□□□ 0.79
VPS28-213ENST00000530983 BOLA3Q53S33 107 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 ACSBG2Q5FVE4 666 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 FAM91A1Q658Y4 838 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 CCDC110Q8TBZ0 833 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 TRIM56Q9BRZ2 755 aaKnown RBP19.98■□□□□ 0.79
VPS28-213ENST00000530983 ASB7Q9H672 318 aa19.98■□□□□ 0.79
VPS28-213ENST00000530983 NGRNQ9NPE2 291 aaKnown RBP19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms