RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 MAP3K21Q5TCX8 1036 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 SLC9A4Q6AI14 798 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 SP5Q6BEB4 398 aaPredicted RBP8.38□□□□□ -1.07
LSM1-202ENST00000520286 MSANTD2Q6P1R3 559 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 RINLQ6ZS11 566 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 SYT13Q7L8C5 426 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 TRABD2AQ86V40 505 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 SYNE4Q8N205 404 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 HMGB4Q8WW32 186 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 ALOXE3Q9BYJ1 711 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 NOD2Q9HC29 1040 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 INTS13Q9NVM9 706 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 KCND3Q9UK17 655 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 DRG1Q9Y295 367 aaKnown RBP8.38□□□□□ -1.07
LSM1-202ENST00000520286 DERAQ9Y315 318 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 RRP7AQ9Y3A4 280 aaKnown RBP8.38□□□□□ -1.07
LSM1-202ENST00000520286 RAD54L2Q9Y4B4 1467 aa8.38□□□□□ -1.07
LSM1-202ENST00000520286 SETD1BQ9UPS6 1966 aaKnown RBP8.37□□□□□ -1.07
LSM1-202ENST00000520286 TARBP1Q13395 1621 aaKnown RBP8.37□□□□□ -1.07
LSM1-202ENST00000520286 PPM1DO15297 605 aa8.37□□□□□ -1.07
LSM1-202ENST00000520286 PAX4O43316 350 aa8.37□□□□□ -1.07
LSM1-202ENST00000520286 BMP7P18075 431 aa8.37□□□□□ -1.07
LSM1-202ENST00000520286 VAV2P52735 878 aa8.37□□□□□ -1.07
LSM1-202ENST00000520286 EIF5P55010 431 aaKnown RBP8.37□□□□□ -1.07
LSM1-202ENST00000520286 FAM189BP81408 668 aa8.37□□□□□ -1.07
LSM1-202ENST00000520286 SF3A3Q12874 501 aaKnown RBP eCLIP8.37□□□□□ -1.07
LSM1-202ENST00000520286 ACOX1Q15067 660 aa8.37□□□□□ -1.07
LSM1-202ENST00000520286 TMEM196Q5HYL7 178 aa8.37□□□□□ -1.07
LSM1-202ENST00000520286 HVCN1Q96D96 273 aa8.37□□□□□ -1.07
LSM1-202ENST00000520286 SSBP3Q9BWW4 388 aaPredicted RBP8.37□□□□□ -1.07
LSM1-202ENST00000520286 ACTRT3Q9BYD9 372 aa8.37□□□□□ -1.07
LSM1-202ENST00000520286 ZNF768Q9H5H4 540 aaKnown RBP8.37□□□□□ -1.07
LSM1-202ENST00000520286 JMJD4Q9H9V9 463 aa8.37□□□□□ -1.07
LSM1-202ENST00000520286 GALNT9Q9HCQ5 603 aa8.37□□□□□ -1.07
LSM1-202ENST00000520286 FBXO2Q9UK22 296 aaPredicted RBP8.37□□□□□ -1.07
LSM1-202ENST00000520286 TOP2AP11388 1531 aaKnown RBP8.37□□□□□ -1.07
LSM1-202ENST00000520286 POLA1P09884 1462 aaPredicted RBP8.37□□□□□ -1.07
LSM1-202ENST00000520286 TRGV11A0A075B6L2 103 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 CCDC196A0A1B0GTZ2 297 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 KRTAP23-1A1A580 65 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 MARCH11A6NNE9 402 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 ZAR1LA6NP61 321 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 B4E171 279 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 EXOC5O00471 708 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 RNASET2O00584 256 aaKnown RBP8.36□□□□□ -1.07
LSM1-202ENST00000520286 ZNF623O75123 536 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 NCR1O76036 304 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 WDR47O94967 919 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 TFRCP02786 760 aaKnown RBP8.36□□□□□ -1.07
LSM1-202ENST00000520286 TSPAN7P41732 249 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 MAGEA10P43363 369 aaPredicted RBP8.36□□□□□ -1.07
LSM1-202ENST00000520286 CDK7P50613 346 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 NR1H2P55055 460 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 BBS12Q6ZW61 710 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 TBC1D1Q86TI0 1168 aaPredicted RBP8.36□□□□□ -1.07
LSM1-202ENST00000520286 SIAH1Q8IUQ4 282 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 METTL25Q8N6Q8 603 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 MCRS1Q96EZ8 462 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 AKIP1Q9NQ31 210 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 TMEM74BQ9NUR3 256 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 PI4KBQ9UBF8 816 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 STEAP1Q9UHE8 339 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 CHD1O14646 1710 aa8.36□□□□□ -1.07
LSM1-202ENST00000520286 KAT6BQ8WYB5 2073 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 GAGE12BA1L429 117 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 GAGE12HA6NDE8 117 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 OTOL1A6NHN0 477 aaPredicted RBP8.35□□□□□ -1.07
LSM1-202ENST00000520286 LARGE1O95461 756 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 CD19P15391 556 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 PPP3CBP16298 524 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 CAPN3P20807 821 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 PBX1P40424 430 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 GSTM5P46439 218 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 MCM2P49736 904 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 RBM5P52756 815 aaKnown RBP eCLIP8.35□□□□□ -1.07
LSM1-202ENST00000520286 JAG1P78504 1218 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 RESTQ13127 1097 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 ANKRD1Q15327 319 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 HS1BP3Q53T59 392 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 RABL3Q5HYI8 236 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 PIK3AP1Q6ZUJ8 805 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 RRP36Q96EU6 259 aaKnown RBP8.35□□□□□ -1.07
LSM1-202ENST00000520286 MECRQ9BV79 373 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 GPR63Q9BZJ6 419 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 CCDC134Q9H6E4 229 aa8.35□□□□□ -1.07
LSM1-202ENST00000520286 LIN7CQ9NUP9 197 aaKnown RBP8.35□□□□□ -1.07
LSM1-202ENST00000520286 NKX1-2Q9UD57 310 aaPredicted RBP8.35□□□□□ -1.07
LSM1-202ENST00000520286 SNAPC4Q5SXM2 1469 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 BAIAP3O94812 1187 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 VNN1O95497 513 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 ERBB2P04626 1255 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 PDHA1P08559 390 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 CNPP09543 421 aaKnown RBP8.34□□□□□ -1.07
LSM1-202ENST00000520286 DRD1P21728 446 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 ATXN1P54253 815 aaKnown RBP8.34□□□□□ -1.07
LSM1-202ENST00000520286 DGAT2L7PQ6IED9 249 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 C1QL4Q86Z23 238 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 TSPYL6Q8N831 410 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 SUPT20HQ8NEM7 779 aa8.34□□□□□ -1.07
LSM1-202ENST00000520286 SLC22A17Q8WUG5 538 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms