RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 IL31RAQ8NI17 732 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 CPT1CQ8TCG5 803 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 SH3RF3Q8TEJ3 882 aaPredicted RBP8.09□□□□□ -1.11
SDCBP-208ENST00000520228 SCAMP4Q969E2 229 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 TTC17Q96AE7 1141 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 EDC3Q96F86 508 aaKnown RBP8.09□□□□□ -1.11
SDCBP-208ENST00000520228 CLMNQ96JQ2 1002 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 TLR10Q9BXR5 811 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 BHMT2Q9H2M3 363 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 ZNF768Q9H5H4 540 aaKnown RBP8.09□□□□□ -1.11
SDCBP-208ENST00000520228 PAG1Q9NWQ8 432 aa8.09□□□□□ -1.11
SDCBP-208ENST00000520228 AATFQ9NY61 560 aaKnown RBP eCLIP8.09□□□□□ -1.11
SDCBP-208ENST00000520228 PSME4Q14997 1843 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 B8ZZF3 427 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 E9PLN8 166 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 PHGDHO43175 533 aaKnown RBP8.08□□□□□ -1.12
SDCBP-208ENST00000520228 FRS3O43559 492 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 CAND2O75155 1236 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 IGHDP01880 384 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 ELANEP08246 267 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 RARBP10826 455 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 FCER1AP12319 257 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 NR4A1P22736 598 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 ZFP36P26651 326 aaKnown RBP8.08□□□□□ -1.12
SDCBP-208ENST00000520228 SOX8P57073 446 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 FAM193AP78312 1265 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 FAM189BP81408 668 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 TCF15Q12870 199 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 APOA5Q6Q788 366 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 CCDC149Q6ZUS6 474 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 ADGRA1Q86SQ6 560 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 CERS3Q8IU89 383 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 AOPEPQ8N6M6 819 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 MIGA1Q8NAN2 632 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 CACTINQ8WUQ7 758 aaKnown RBP8.08□□□□□ -1.12
SDCBP-208ENST00000520228 MARS2Q96GW9 593 aaKnown RBP8.08□□□□□ -1.12
SDCBP-208ENST00000520228 VKORC1Q9BQB6 163 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 SLC46A2Q9BY10 475 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 REXO4Q9GZR2 422 aaKnown RBP8.08□□□□□ -1.12
SDCBP-208ENST00000520228 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.08□□□□□ -1.12
SDCBP-208ENST00000520228 RSAD1Q9HA92 442 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 SLAMF7Q9NQ25 335 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 DDX4Q9NQI0 724 aaKnown RBP8.08□□□□□ -1.12
SDCBP-208ENST00000520228 PARPBPQ9NWS1 579 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 TRPM5Q9NZQ8 1165 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 VSX1Q9NZR4 365 aaPredicted RBP8.08□□□□□ -1.12
SDCBP-208ENST00000520228 ATP11BQ9Y2G3 1177 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 SSC5DA1L4H1 1573 aa8.08□□□□□ -1.12
SDCBP-208ENST00000520228 RPAP1Q9BWH6 1393 aaPredicted RBP8.08□□□□□ -1.12
SDCBP-208ENST00000520228 A0A1B0GTW7 788 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 MARCH11A6NNE9 402 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 FAM20BO75063 409 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 ADRB1P08588 477 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 C1SP09871 688 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 ARFIP2P53365 341 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 DYNLL1P63167 89 aaKnown RBP8.07□□□□□ -1.12
SDCBP-208ENST00000520228 PURAQ00577 322 aaKnown RBP8.07□□□□□ -1.12
SDCBP-208ENST00000520228 SEMA5AQ13591 1074 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 NRN1LQ496H8 165 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 RNF220Q5VTB9 566 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 CCSAPQ6IQ19 270 aaPredicted RBP8.07□□□□□ -1.12
SDCBP-208ENST00000520228 DARS2Q6PI48 645 aaKnown RBP8.07□□□□□ -1.12
SDCBP-208ENST00000520228 OTUD7AQ8TE49 926 aaPredicted RBP8.07□□□□□ -1.12
SDCBP-208ENST00000520228 ZNF503Q96F45 646 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 PNKPQ96T60 521 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 ZNF341Q9BYN7 854 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 RNPEPQ9H4A4 650 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 ARNT2Q9HBZ2 717 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.07□□□□□ -1.12
SDCBP-208ENST00000520228 PIH1D1Q9NWS0 290 aaKnown RBP8.07□□□□□ -1.12
SDCBP-208ENST00000520228 HSFX1Q9UBD0 423 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 DKK2Q9UBU2 259 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 CPA4Q9UI42 421 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 MED16Q9Y2X0 877 aa8.07□□□□□ -1.12
SDCBP-208ENST00000520228 ZNF646O15015 1829 aaPredicted RBP8.07□□□□□ -1.12
SDCBP-208ENST00000520228 NCANO14594 1321 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 TTC41PQ6P2S7 1318 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 ZNF532Q9HCE3 1301 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 GAGE12BA1L429 117 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 GAGE12HA6NDE8 117 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 DDTLA6NHG4 134 aaPredicted RBP8.06□□□□□ -1.12
SDCBP-208ENST00000520228 MYO1FO00160 1098 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 FOXN1O15353 648 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 CA12O43570 354 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 CFIP05156 583 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 MX1P20591 662 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 CTCFP49711 727 aaPredicted RBP8.06□□□□□ -1.12
SDCBP-208ENST00000520228 PSMC1P62191 440 aaKnown RBP8.06□□□□□ -1.12
SDCBP-208ENST00000520228 OCA2Q04671 838 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 VGLL4Q14135 290 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 KIAA0753Q2KHM9 967 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 ZSCAN25Q6NSZ9 544 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 NOL8Q76FK4 1167 aaKnown RBP8.06□□□□□ -1.12
SDCBP-208ENST00000520228 MAPKAPK5Q8IW41 473 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 SMC5Q8IY18 1101 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 Q8NA96 180 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 PDPRQ8NCN5 879 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 LRTOMTQ8WZ04 291 aa8.06□□□□□ -1.12
SDCBP-208ENST00000520228 ZKSCAN4Q969J2 545 aaPredicted RBP8.06□□□□□ -1.12
SDCBP-208ENST00000520228 TRIM54Q9BYV2 358 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms