RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 SAA2-SAA4A0A096LPE2 208 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 SLC22A23A1A5C7 686 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 E9PQ18 207 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 AP4M1O00189 453 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 RRHO14718 337 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 PLAUP00749 431 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 SBK3P0C264 359 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 CHRM3P20309 590 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 COPB1P53618 953 aaKnown RBP-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 SLC14A1Q13336 389 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 MTM1Q13496 603 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 PIK3CD-AS1Q5SR53 167 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 C8orf82Q6P1X6 216 aaPredicted RBP-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 C19orf48Q6RUI8 117 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 DPY19L3Q6ZPD9 716 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 DCDC5Q6ZRR9 648 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 PARP8Q8N3A8 854 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 LINC01465Q8N7H1 131 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 DCBLD1Q8N8Z6 715 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 KBTBD3Q8NAB2 608 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 LSM14AQ8ND56 463 aaKnown RBP-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 PSD4Q8NDX1 1056 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 SLC17A8Q8NDX2 589 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 NEK9Q8TD19 979 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 TMEM174Q8WUU8 243 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 RIN2Q8WYP3 895 aaPredicted RBP-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 EME1Q96AY2 570 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 LINC00479Q96M42 142 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 SMOQ99835 787 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 ISCUQ9H1K1 167 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 ETAA1Q9NY74 926 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 SLC6A5Q9Y345 797 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 CDY2AQ9Y6F7 541 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 NUMBLQ9Y6R0 609 aa-0.34□□□□□ -2.46
RNU6-539P-201ENST00000516665 COL5A1P20908 1838 aaPredicted RBP-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 ANKRD17O75179 2603 aaKnown RBP-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 LCHNA4D1U4 455 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 H7C423 109 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 POLRMTO00411 1230 aaKnown RBP-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 TEX33O43247 280 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 FGF17O60258 216 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 IFNA2P01563 188 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 FGAP02671 866 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 CD63P08962 238 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 TACR3P29371 465 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 NASPP49321 788 aaPredicted RBP-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 TOB1P50616 345 aaPredicted RBP-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 ADPRHP54922 357 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 RACK1P63244 317 aaKnown RBP-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 FMO1Q01740 532 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 DSC1Q08554 894 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 PAK2Q13177 524 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 ZNF174Q15697 407 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 ARHGAP44Q17R89 818 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 ZNF876PQ49A33 203 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 C4orf46Q504U0 113 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 CREB3L3Q68CJ9 461 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 RETSATQ6NUM9 610 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 NAA40Q86UY6 237 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 ZGPATQ8N5A5 531 aaKnown RBP-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 OR14C36Q8NHC7 312 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 CPLX3Q8WVH0 158 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 ATG4AQ8WYN0 398 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 ANAPC16Q96DE5 110 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 ABHD8Q96I13 439 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 RNPC3Q96LT9 517 aaKnown RBP-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 GLOD4Q9HC38 313 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 PAPOLBQ9NRJ5 636 aaKnown RBP-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 SERTAD3Q9UJW9 196 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 FZD10Q9ULW2 581 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 SSX2IPQ9Y2D8 614 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 PPP2R3BQ9Y5P8 575 aa-0.35□□□□□ -2.47
RNU6-539P-201ENST00000516665 GREB1LQ9C091 1923 aaPredicted RBP-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 LOC101059915A0A1B0GWI6 518 aaPredicted RBP-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 H7C1D1 291 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 ERC2O15083 957 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 SMAD7O15105 426 aaKnown RBP-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 PI15O43692 258 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 UGDHO60701 494 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 ZNF821O75541 412 aaPredicted RBP-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 AFPP02771 609 aaKnown RBP-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 AMY1AP04745 511 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 DLDP09622 509 aaKnown RBP-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 PATE4P0C8F1 98 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 DAOP14920 347 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 DPEP1P16444 411 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 ITGALP20701 1170 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 HOXA7P31268 230 aaPredicted RBP-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 HK3P52790 923 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 BNC1Q01954 994 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 SREBF2Q12772 1141 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 NFATC2Q13469 925 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 CC2D1BQ5T0F9 858 aaKnown RBP-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 FNBP1LQ5T0N5 605 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 DCST1Q5T197 706 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 METTL7BQ6UX53 244 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 FOXL2NBQ6ZUU3 175 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 FJX1Q86VR8 437 aa-0.36□□□□□ -2.47
RNU6-539P-201ENST00000516665 MARCH9Q86YJ5 346 aa-0.36□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms