RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 FANCBQ8NB91 859 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 AVL9Q8NBF6 648 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 B3GALNT2Q8NCR0 500 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC191Q8NCU4 936 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 C3orf20Q8ND61 904 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SIMC1Q8NDZ2 872 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CPEB3Q8NE35 698 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SEMA6DQ8NFY4 1073 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR10H5Q8NGA6 315 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR5AN1Q8NGI8 311 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR6Y1Q8NGX8 325 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CEP70Q8NHQ1 597 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GOT1L1Q8NHS2 421 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TDRD7Q8NHU6 1098 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL31RAQ8NI17 732 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPP1R35Q8TAP8 253 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MPLKIPQ8TAP9 179 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GSDMBQ8TAX9 411 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM71BQ8TC56 605 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 STT3BQ8TCJ2 826 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 OTUD7AQ8TE49 926 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIGOQ8TEQ8 1089 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SMCR8Q8TEV9 937 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 IPO4Q8TEX9 1081 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TGFBRAP1Q8WUH2 860 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF480Q8WV37 535 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 KBTBD7Q8WVZ9 684 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZFPM2Q8WW38 1151 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GAB3Q8WWW8 586 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 RUFY2Q8WXA3 655 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 AUTS2Q8WXX7 1259 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 THAP4Q8WY91 577 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 HERVK_113Q902F9 699 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 RSC1A1Q92681 617 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 HTRA1Q92743 480 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TAF4BQ92750 862 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 DLG3Q92796 817 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 N4BP2L2Q92802 583 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 DDX17Q92841 729 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 MUL1Q969V5 352 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 RGMAQ96B86 450 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SH3KBP1Q96B97 665 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CENPTQ96BT3 561 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 EAF2Q96CJ1 260 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF653Q96CK0 615 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 NMD3Q96D46 503 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 RNF31Q96EP0 1072 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 RRP36Q96EU6 259 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTCD3Q96EY7 689 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 FBXL20Q96IG2 436 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF845Q96IR2 970 aaPredicted RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 RADILQ96JH8 1075 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CNDP2Q96KP4 475 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNX27Q96L92 541 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC43Q96MW1 224 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 FYTTD1Q96QD9 318 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPAG5Q96R06 1193 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 HAPLN3Q96S86 360 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 YME1L1Q96TA2 773 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GDF15Q99988 308 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM118BQ9BPY3 351 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPATCH1Q9BRR8 931 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRFN3Q9BTN0 628 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CENPOQ9BU64 300 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 DDX23Q9BUQ8 820 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADI1Q9BV57 179 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 KATNAL1Q9BW62 490 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 APOL5Q9BWW9 433 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRTAP3-1Q9BYR8 98 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TXLNGYQ9BZA5 131 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 C22orf23Q9BZE7 217 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 WDR11Q9BZH6 1224 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 EDEM3Q9BZQ6 932 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 XPO4Q9C0E2 1151 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARHGAP39Q9C0H5 1083 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PAIP1Q9H074 479 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ABCG4Q9H172 646 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR10A4Q9H209 315 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 DHX36Q9H2U1 1008 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CDIP1Q9H305 208 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GHITMQ9H3K2 345 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRDM13Q9H4Q3 707 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 RABEP2Q9H5N1 569 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 EPS8L2Q9H6S3 715 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GREM2Q9H772 168 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SYNCQ9H7C4 482 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZMAT4Q9H898 229 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZMAT3Q9HA38 289 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 GRPEL1Q9HAV7 217 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRPV4Q9HBA0 871 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 NOD2Q9HC29 1040 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SMURF1Q9HCE7 757 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 XAB2Q9HCS7 855 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SEPSECSQ9HD40 501 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 ERVK-5Q9HDB9 667 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 SARS2Q9NP81 518 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 OBP2BQ9NPH6 170 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 NECTIN3Q9NQS3 549 aa0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 EIF2B3Q9NR50 452 aaKnown RBP0.64□□□□□ -2.31
RNU4-54P-201ENST00000516428 CNNM1Q9NRU3 951 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms